Hg_chrom1_TN10mRNA_1444
Organism: Heterodera glycines Gene Locus: chr1:14334692-14336858 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.195 | 1.379 | 0.503 | 0.545 | 0.527 | 0.912 | 0.565 | 0.198 | 1.405 | 1.602 | 0.779 | 1.628 | 2.525 | 0.684 | 0.403 | 1.129 | 0.842 | 1.198 | 1.52 | 1.163 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1382
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.441
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.063
|
0.182
|
0.091
|
0.123
|
0.510
|
0.479
|
0.477
|
0.045
|
0.442
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006108
|
1.000
|
1.000
|
Hsc_gene_2491.t1
|
Hsc_gene_2491.t1
|
— | — |
KAI1719606.1 sugar efflux transporter for intercellular exchange domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051119
|
GO:0008150_0.935|GO:0009987_0.720|GO:0003674_0.678|GO:0006810_0.643|GO:0051179_0.643|GO:0051234_0.643|GO:0055085_0.599|GO:0005575_0.572|GO:0110165_0.568|GO:0005215_0.558|GO:0022857_0.558|GO:0008643_0.529|GO:0034219_0.528|GO:0016020_0.525|GO:0015144_0.514
|
IPR004316+12-90_124-207+|IPR047664+14-206+
|
— |
PF03083+12-90_124-207+Sugar_efflux_transporter_for_intercellular_exchange
|
— |
PTHR10791+14-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-253
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
28235.060
|
8.434
|
3.500
|
13.439
|
15.415
|
35.968
|
64.032
|
7.510
|
5.929
|
49.802
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkgrey
|
1446.163
|
730.730
|
1033.844
|
773.768
|
1061.301
|
1136.071
|
1108.992
|
1485.504
|
172.141
|
3449.029
|
2044.648
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.273
|
— |
-0.311
|
0.424
|
— | — | — | — |
-3.365
|
— | — | — | — |
No JSON data available for plots.