Hg_chrom1_TN10mRNA_1445
Organism: Heterodera glycines Gene Locus: chr1:14337259-14338798 Feature type: polypeptideProtein Sequence
Length: 239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.487 | 0.876 | 0.913 | 0.577 | 1.255 | 0.858 | 0.797 | 1.255 | 1.953 | 1.131 | 0.888 | 1.723 | 1.511 | 0.563 | 1.537 | 1.375 | 0.48 | 1.141 | 0.966 | 0.615 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1383
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— |
PQQKRFK,RDRKRKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.738
|
0.382
|
0.018
|
0.469
|
0.183
|
0.404
|
0.086
|
0.072
|
0.030
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006109
|
1.000
|
1.000
|
Hsc_gene_2490.t1
|
Hsc_gene_2490.t1
|
— |
A7UL74.1 Protein CHROMOSOME TRANSMISSION FIDELITY 7 [Arabidopsis thaliana]
|
KAI3422155.1 Establishment of cohesion 1 [Globodera pallida]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.929|GO:0009987_0.872|GO:0071840_0.726|GO:0016043_0.722|GO:0005575_0.698|GO:0006996_0.691|GO:0110165_0.689|GO:0007049_0.678|GO:0022402_0.678|GO:0051276_0.674|GO:0007062_0.670|GO:0005622_0.639|GO:0016020_0.624|GO:0043226_0.596|GO:0043229_0.585|GO:0043227_0.557|GO:0043231_0.544|GO:0008152_0.543|GO:0044238_0.527|GO:0043170_0.506
|
IPR016181+128-182+|IPR028005+1-39+|IPR028009+157-220+
|
— |
PF13878+1-39+zinc-finger_of_acetyl-transferase_ESCO|PF13880+157-220+ESCO1/2_acetyl-transferase
|
— |
PTHR45884+1-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-239
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
27260.410
|
8.148
|
5.000
|
28.452
|
11.297
|
48.117
|
51.883
|
15.900
|
12.552
|
44.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
488.386
|
463.074
|
518.875
|
646.611
|
833.133
|
557.948
|
811.375
|
648.979
|
239.501
|
277.064
|
260.966
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.345
|
0.427
|
0.334
|
-0.564
|
0.549
|
— |
0.464
|
— | — | — | — | — |
No JSON data available for plots.