Hg_chrom1_TN10mRNA_1447
Organism: Heterodera glycines Gene Locus: chr1:14342008-14346680 Feature type: polypeptideProtein Sequence
Length: 980
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 0.712 | 1.02 | 0.669 | 1.173 | 1.57 | 0.632 | 1.633 | 1.451 | 1.407 | 0.804 | 1.14 | 1.162 | 0.628 | 1.603 | 1.035 | 0.769 | 0.773 | 0.706 | 0.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1385
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
16-37
|
0.995
|
— | — |
0.000
|
— | — |
0.257
|
0.172
|
0.021
|
0.599
|
0.138
|
0.509
|
0.478
|
0.061
|
0.147
|
0.204
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003063
|
1.000
|
2.000
|
Hsc_gene_2488.t1;Hsc_gene_2488.t2
|
Hsc_gene_2488.t1;Hsc_gene_2488.t2
|
— |
Q61JT8.1 Vacuolar protein sorting-associated protein 54 [Caenorhabditis briggsae]
|
KAI3422153.1 Vacuolar protein sorting-associated protein 54 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000938|GO:0042147
|
GO:0005575_0.920|GO:0110165_0.916|GO:0005622_0.849|GO:0016020_0.832|GO:0043226_0.788|GO:0043229_0.787|GO:0071944_0.764|GO:0005737_0.763|GO:0005886_0.752|GO:0043227_0.746|GO:0043231_0.712|GO:0008150_0.625|GO:0005773_0.618|GO:0012505_0.612|GO:0009987_0.569|GO:0005794_0.558|GO:0032991_0.541
|
IPR012501+735-864+|IPR019515+196-351+|IPR039745+12-943+
|
— |
PF07928+735-864+Vps54-like_protein|PF10475+196-351+Vacuolar-sorting_protein_54,_of_GARP_complex
|
— |
PTHR12965+12-943+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;507-557
|
2.000
|
28-506;558-980
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
111116.910
|
8.039
|
21.000
|
29.082
|
10.306
|
50.204
|
49.796
|
16.429
|
12.653
|
44.490
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
greenyellow
|
1375.722
|
1357.654
|
1553.495
|
1146.727
|
1205.385
|
1639.227
|
2919.347
|
1786.334
|
906.642
|
985.740
|
951.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.381
|
-0.329
|
— |
0.458
|
0.844
|
— |
0.854
|
— | — | — | — | — |
No JSON data available for plots.