Hg_chrom1_TN10mRNA_1448
Organism: Heterodera glycines Gene Locus: chr1:14346896-14349920 Feature type: polypeptideProtein Sequence
Length: 722
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.095 | 0.999 | 0.856 | 0.573 | 1.223 | 1.136 | 0.462 | 1.177 | 0.769 | 1.685 | 1.259 | 1.629 | 1.193 | 0.799 | 1.555 | 0.91 | 0.908 | 0.818 | 0.639 | 0.204 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,RRRK,RRKSR,RLVKRVK,RRAKGIHWLRKRRLF,RRNVRDQMGEVQRKKML,KRMEQIKRDWLLERKVRER,KKNQRQIGGKWKSKRSKKY,KRAPFLGRILQFCEENKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.868
|
0.087
|
0.020
|
0.204
|
0.026
|
0.012
|
0.050
|
0.012
|
0.020
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003064
|
2.000
|
1.000
|
Hsc_gene_2487.t1
|
— | — |
P91136.3 Nucleolar complex protein 3 homolog [Caenorhabditis elegans]
|
KAI1720542.1 nucleolar complex-associated protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.936|GO:0110165_0.936|GO:0005622_0.881|GO:0016020_0.878|GO:0043226_0.830|GO:0043229_0.809|GO:0043227_0.774|GO:0043231_0.741|GO:0008150_0.668|GO:0005634_0.641|GO:0043228_0.530|GO:0043232_0.530
|
IPR005612+486-646+|IPR011501+165-245+|IPR016903+24-245+
|
— |
PF03914+486-646+CBF/Mak21_family|PF07540+165-245+Nucleolar_complex-associated_protein
|
— |
PTHR14428+24-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-173
|
1.000
|
174-722
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
81654.470
|
10.205
|
36.500
|
30.332
|
8.172
|
50.970
|
49.030
|
18.283
|
12.050
|
45.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1196.672
|
1691.104
|
1262.143
|
1306.798
|
1521.912
|
1294.455
|
1615.611
|
1088.300
|
898.232
|
894.144
|
895.896
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.652
|
-0.509
|
0.159
|
0.188
|
-0.219
|
0.331
|
-0.355
|
0.714
|
— | — | — | — | — |
No JSON data available for plots.