Hg_chrom1_TN10mRNA_1449
Organism: Heterodera glycines Gene Locus: chr1:14350151-14355464 Feature type: polypeptideProtein Sequence
Length: 1,113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.679 | 1.63 | 1.078 | 0.31 | 1.423 | 1.267 | 0.77 | 1.213 | 0.799 | 0.923 | 1.075 | 1.955 | 1.248 | 1.002 | 1.302 | 1.078 | 0.972 | 0.613 | 1.037 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1387
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.349
|
0.211
|
0.009
|
0.681
|
0.058
|
0.081
|
0.090
|
0.054
|
0.180
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001722
|
1.000
|
3.000
|
Hsc_gene_2486.t1;Hsc_gene_2486.t3;Hsc_gene_2486.t4
|
Hsc_gene_2486.t1;Hsc_gene_2486.t2;Hsc_gene_2486.t3;Hsc_gene_2486.t5;Hsc_gene_2486.t6
|
— |
Q5UR67.1 N-glycosidase R617 [Acanthamoeba polyphaga mimivirus]
|
WP_224240179.1 NADAR family protein [Hyalangium gracile]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0003674_0.876|GO:0008152_0.809|GO:0003824_0.716|GO:0016787_0.692|GO:1901135_0.678|GO:0005575_0.664|GO:0110165_0.664|GO:0016798_0.650|GO:0016799_0.650|GO:0005622_0.620|GO:0009987_0.583|GO:0016020_0.583|GO:0043226_0.572|GO:0043229_0.562|GO:0043227_0.512
|
IPR012816+923-1086_924-1084_927-1087+|IPR037238+912-1090_918-1088+
|
— |
PF08719+927-1087+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-104;322-708
|
2.000
|
105-321;709-1113
|
2b3w_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
126634.350
|
6.668
|
2.500
|
30.368
|
10.422
|
55.795
|
44.205
|
15.903
|
14.465
|
48.877
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2379.519
|
5061.394
|
1963.929
|
1925.264
|
2288.286
|
2035.332
|
3468.986
|
1931.274
|
1464.727
|
2308.926
|
1947.127
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.597
|
-1.532
|
— |
0.218
|
-0.154
|
0.780
|
-0.182
|
0.989
|
— | — | — | — | — |
No JSON data available for plots.