Hg_chrom1_TN10mRNA_145
Organism: Heterodera glycines Gene Locus: chr1:1061136-1064410 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 1.278 | 0.849 | 0.663 | 0.962 | 1.479 | 0.85 | 1.786 | 1.16 | 0.631 | 0.833 | 1.778 | 0.611 | 1.004 | 1.57 | 0.863 | 1.081 | 1.249 | 1.057 | 0.727 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_141
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRGAQRVVITAGNKRQRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.875
|
0.147
|
0.018
|
0.308
|
0.039
|
0.022
|
0.013
|
0.007
|
0.123
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002881
|
1.000
|
2.000
|
Hsc_gene_20313.t1;Hsc_gene_20316.t1
|
Hsc_gene_20317.t1
|
— |
Q5REA8.1 Thioredoxin domain-containing protein 17 [Pongo abelii]
|
KAI1717128.1 thioredoxin domain-containing protein 17 [Ditylenchus destructor]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0047134
|
GO:0005575_0.597|GO:0110165_0.586|GO:0003674_0.570|GO:0005622_0.523
|
IPR007588+4-65+|IPR010357+244-343+|IPR036249+241-329+|IPR045108+227-356+
|
— |
PF04500+4-65+FLYWCH_zinc_finger_domain|PF06110+244-343+Thioredoxin_domain-containing_protein_17-like,_thioredoxin_domain
|
— |
PTHR12452+227-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-215
|
1.000
|
216-364
|
7xpw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
40758.140
|
9.481
|
16.500
|
27.198
|
9.615
|
51.099
|
48.901
|
16.758
|
10.440
|
52.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
tan
|
832.125
|
892.734
|
1047.335
|
1401.394
|
1371.788
|
1128.993
|
1037.167
|
779.888
|
975.633
|
36.585
|
439.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.513
|
0.529
|
— |
-0.266
|
— |
-0.637
|
0.553
|
4.678
|
— |
5.532
|
— | — |
No JSON data available for plots.