Hg_chrom1_TN10mRNA_1452
Organism: Heterodera glycines Gene Locus: chr1:14361530-14363984 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 0.786 | 1.28 | 0.486 | 1.08 | 1.011 | 0.671 | 0.563 | 1.189 | 1.332 | 1.622 | 1.491 | 1.174 | 0.813 | 1.207 | 0.926 | 0.647 | 0.982 | 0.433 | 0.497 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1390
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKAIGMSKGQRKRKDKAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.872
|
0.056
|
0.059
|
0.192
|
0.037
|
0.018
|
0.049
|
0.004
|
0.029
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006113
|
1.000
|
1.000
|
Hsc_gene_2483.t1
|
Hsc_gene_2483.t1
|
— | — |
KAH7730038.1 Protein F53F4.11 [Aphelenchus avenae]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.904|GO:0005622_0.865|GO:0043226_0.823|GO:0043229_0.810|GO:0008150_0.721|GO:0016020_0.673|GO:0043228_0.671|GO:0043232_0.671|GO:0009987_0.666|GO:0043227_0.619|GO:0043231_0.599|GO:0005634_0.501
|
IPR016095+107-191+|IPR023674+35-254+|IPR028364+17-254_35-247+
|
— |
PF00687+35-247+Ribosomal_protein_L1p/L10e_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-355
|
1.000
|
1-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
39663.880
|
9.776
|
13.000
|
31.268
|
7.606
|
49.014
|
50.986
|
17.746
|
13.521
|
47.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
2027.357
|
2106.977
|
1538.017
|
2165.933
|
2075.953
|
1509.717
|
1888.094
|
1488.296
|
1866.625
|
2679.847
|
2331.323
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.684
|
-0.097
|
0.603
|
-0.093
|
-0.445
|
0.333
|
— |
0.486
|
— | — | — | — | — |
No JSON data available for plots.