SCN Proteipedia

Hg_chrom1_TN10mRNA_1455

Organism: Heterodera glycines Gene Locus: chr1:14366403-14369808 Feature type: polypeptide

Protein Sequence

Length: 655

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.728	0.675	1.11	0.369	1.985	1.096	0.491	0.382	0.984	0.949	1.666	0.898	1.06	1.262	1.558	1.265	0.676	0.763	0.705	0.494	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1393	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RHKKK,RRIKRKK,KKKRSQKSPNRKKSRH,KRKSLSSAEDSDEAEEKRK,RKSLSSAEDSDEAEEKRKL,EKRKLKKEVKEKEESYQARLKKWEEREKRMAKLYDKEREEEKQRQK	—	—	30-52	0.998	—	—	0.000	—	—	0.957	0.025	0.001	0.163	0.014	0.009	0.048	0.053	0.034	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001723	2.000	2.000	Hsc_gene_2480.t1;Hsc_gene_2480.t3	Hsc_gene_2480.t1;Hsc_gene_2480.t2;Hsc_gene_2480.t3;Hsc_gene_2480.t4	—	B2RY56.2 RNA-binding protein 25 [Mus musculus]	KAI1720547.1 PWI domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.920\|GO:0110165_0.919\|GO:0005622_0.869\|GO:0008150_0.866\|GO:0009987_0.837\|GO:0016020_0.800\|GO:0043226_0.772\|GO:0043229_0.762\|GO:0008152_0.712\|GO:0043170_0.712\|GO:0009058_0.703\|GO:0009059_0.703\|GO:0010467_0.703\|GO:0044237_0.703\|GO:0044249_0.703\|GO:0006139_0.696\|GO:0044238_0.696\|GO:0043227_0.695\|GO:0090304_0.693\|GO:0016070_0.682\|GO:0065007_0.679\|GO:0050789_0.665\|GO:0043231_0.663\|GO:0050794_0.651\|GO:0016071_0.604\|GO:0003674_0.601\|GO:0005488_0.601\|GO:0019222_0.568\|GO:0031323_0.562\|GO:0060255_0.562\|GO:0005634_0.558\|GO:0009889_0.543\|GO:0031326_0.539\|GO:0010468_0.536\|GO:0010556_0.536\|GO:0080090_0.512	IPR000504+73-150_74-146_75-143+\|IPR002483+544-641_557-630_565-629+\|IPR012677+54-154+\|IPR034268+75-155+\|IPR035979+49-149+\|IPR036483+563-629+\|IPR052768+167-636+	SM00311+557-630+\|SM00360+74-146+	PF00076+75-143+RNA_recognition_motif\|PF01480+565-629+PWI_domain	—	PTHR18806+167-636+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	170-496;653-655	2.000	1-169;497-652	3v53_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.739	74966.700	8.321	6.500	37.405	7.176	57.557	42.443	19.389	18.015	45.038

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	2817.628	6573.525	3297.299	2589.248	2436.321	2078.430	2320.799	2972.468	2915.014	1790.326	2272.335

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.226	-1.481	-0.239	-0.119	-0.215	—	0.413	—	—	—	—	—	—

No JSON data available for plots.

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