Hg_chrom1_TN10mRNA_1456
Organism: Heterodera glycines Gene Locus: chr1:14366500-14370011 Feature type: polypeptideProtein Sequence
Length: 642
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 0.652 | 1.048 | 0.376 | 2.025 | 1.078 | 0.482 | 0.389 | 0.9 | 1.01 | 1.652 | 0.825 | 0.952 | 1.288 | 1.558 | 1.313 | 0.689 | 0.755 | 0.839 | 0.458 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1393
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RHKKK,RRIKRKK,KKKRSQKSPNRKKSRH,KRKSLSSAEDSDEAEEKRK,RKSLSSAEDSDEAEEKRKL,EKRKLKKEVKEKEESYQARLKKWEEREKRMAKLYDKEREEEKQRQK
|
— | — |
30-52
|
0.998
|
— | — |
0.000
|
— | — |
0.964
|
0.024
|
0.002
|
0.180
|
0.021
|
0.011
|
0.053
|
0.059
|
0.024
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001723
|
2.000
|
2.000
|
Hsc_gene_2480.t1;Hsc_gene_2480.t3
|
Hsc_gene_2480.t3
|
— |
B2RY56.2 RNA-binding protein 25 [Mus musculus]
|
KAH7722426.1 PWI domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.966|GO:0110165_0.965|GO:0008150_0.956|GO:0005622_0.944|GO:0009987_0.926|GO:0043226_0.919|GO:0016020_0.918|GO:0043229_0.905|GO:0043227_0.838|GO:0043231_0.802|GO:0008152_0.794|GO:0043170_0.794|GO:0009058_0.790|GO:0009059_0.790|GO:0010467_0.790|GO:0044237_0.790|GO:0044249_0.790|GO:0006139_0.778|GO:0044238_0.778|GO:0090304_0.771|GO:0034654_0.767|GO:0016070_0.766|GO:0141187_0.766|GO:0005634_0.761|GO:0032774_0.755|GO:0065007_0.748|GO:0050789_0.737|GO:0050794_0.722|GO:0006396_0.694|GO:0016071_0.691|GO:0006397_0.688|GO:0000375_0.684|GO:0000377_0.684|GO:0000398_0.684|GO:0008380_0.684|GO:0019222_0.632|GO:0031323_0.624|GO:0060255_0.623|GO:0080090_0.619|GO:0009889_0.606|GO:0031326_0.600|GO:0010468_0.598|GO:0010556_0.598|GO:0019219_0.578|GO:0051252_0.572|GO:1903311_0.527|GO:0043484_0.521|GO:0048024_0.521|GO:0050684_0.521|GO:0003674_0.510|GO:0005488_0.510
|
IPR002483+531-628_544-617_552-616+|IPR036483+550-616+|IPR052768+75-171+
|
SM00311+544-617+
|
PF01480+552-616+PWI_domain
|
— |
PTHR18806+75-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;139-483;640-642
|
2.000
|
15-138;484-639
|
3v53_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
73305.790
|
8.326
|
6.500
|
37.227
|
6.854
|
57.632
|
42.368
|
19.315
|
17.913
|
45.327
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
2817.628
|
6573.525
|
3297.299
|
2589.248
|
2436.321
|
2078.430
|
2320.799
|
2972.468
|
2915.014
|
1790.326
|
2272.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.226
|
-1.481
|
-0.239
|
-0.119
|
-0.215
|
— |
0.413
|
— | — | — | — | — | — |
No JSON data available for plots.