SCN Proteipedia

Hg_chrom1_TN10mRNA_1457

Organism: Heterodera glycines Gene Locus: chr1:14371653-14377024 Feature type: polypeptide

Protein Sequence

Length: 958

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.85	1.481	0.987	1.044	0.939	1.071	1.019	1.931	1.717	0.889	0.443	0.798	1.131	0.723	1.342	1.282	0.633	0.917	0.723	0.829	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1394	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.702	0.077	0.007	0.466	0.247	0.268	0.232	0.164	0.185	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006116	1.000	1.000	Hsc_gene_2479.t1	Hsc_gene_2479.t1	—	Q94251.3 F-box protein dre-1 [Caenorhabditis elegans]	KAI3422141.1 CASH [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0008270	GO:0008150_0.957\|GO:0009987_0.745\|GO:0003674_0.726\|GO:0065007_0.701\|GO:0005575_0.651\|GO:0110165_0.649\|GO:0050789_0.637\|GO:0050794_0.623\|GO:0032501_0.609\|GO:0005622_0.530	IPR001810+162-208_165-210_168-208+\|IPR003126+845-917_850-916_861-913+\|IPR006626+407-429_430-452_453-475_476-498_499-521_522-544_545-567_568-590_591-613_614-636_637-659_660-682_683-705_706-728_729-751_752-774_775-797+\|IPR006633+427-566_582-704_720-849+\|IPR011050+258-545_537-720_676-837+\|IPR012334+278-539_591-730_731-842+\|IPR022441+516-557_608-649_700-741+\|IPR036047+163-248+\|IPR039448+492-613_676-830+\|IPR047504+847-915+\|IPR051550+161-897+	SM00256+168-208+\|SM00396+850-916+\|SM00710+407-429_430-452_453-475_476-498_499-521_522-544_545-567_568-590_591-613_614-636_637-659_660-682_683-705_706-728_729-751_752-774_775-797+\|SM00722+427-566_582-704_720-849+	PF02207+861-913+Putative_zinc_finger_in_N-recognin_(UBR_box)\|PF12937+165-210+F-box-like\|PF13229+492-613_676-830+Right_handed_beta_helix_region	G3DSA:2.160.20.10:FF:000005+732-892+F-box_only_protein_11\|G3DSA:2.160.20.10:FF:000006+594-731+F-box_only_protein_11	PTHR22990+161-897+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-147;928-958	1.000	148-927	7yrb_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.770	105713.530	6.652	3.500	24.426	11.691	47.808	52.192	13.361	11.065	53.340

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	yellow	3155.723	2535.050	3202.948	2988.203	4045.784	4423.097	3835.064	3828.681	2083.500	2921.603	2562.416

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.108	0.100	—	0.405	—	-0.195	-0.316	—	—	—	—	—	—

No JSON data available for plots.

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