Hg_chrom1_TN10mRNA_1458
Organism: Heterodera glycines Gene Locus: chr1:14377334-14379768 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.762 | 1.212 | 0.522 | 1.162 | 1.476 | 0.83 | 0.606 | 1.549 | 1.188 | 0.735 | 1.783 | 1.347 | 0.991 | 0.68 | 0.693 | 0.745 | 1.056 | 0.699 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1395
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.222
|
0.050
|
0.018
|
0.745
|
0.199
|
0.262
|
0.322
|
0.004
|
0.254
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001080
|
3.000
|
2.000
|
Hsc_gene_19106.t1;Hsc_gene_2478.t1
|
— | — |
P12844.1 Myosin-3 [Caenorhabditis elegans]
|
KAI1719529.1 myosin head (motor domain) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003774|GO:0005524|GO:0016459
|
GO:0008150_0.937|GO:0003674_0.816|GO:0005575_0.783|GO:0110165_0.750|GO:0005622_0.656|GO:0009987_0.637|GO:0003824_0.619|GO:0008152_0.596|GO:0043226_0.594|GO:0043229_0.584|GO:0044238_0.554|GO:0005737_0.548|GO:0043170_0.502
|
IPR000608+182-328_187-323_192-322+|IPR001609+1-50_2-327_18-50_96-159+|IPR016135+181-330_187-328+|IPR027417+17-68_52-156+|IPR036961+17-31+
|
SM00212+185-328+|SM00242+2-327+
|
PF00063+18-50_96-159+Myosin_head_(motor_domain)|PF00179+192-322+Ubiquitin-conjugating_enzyme
|
— |
PTHR13140+18-69+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-330
|
6qdj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
37047.970
|
4.357
|
-16.000
|
23.030
|
10.303
|
45.758
|
54.242
|
9.394
|
13.636
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
315.489
|
147.062
|
227.970
|
209.071
|
232.573
|
273.300
|
345.792
|
643.170
|
99.761
|
525.842
|
343.236
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.401
|
0.370
|
— | — | — |
0.352
|
1.133
|
-0.752
|
— | — | — | — | — |
No JSON data available for plots.