SCN Proteipedia

Hg_chrom1_TN10mRNA_146

Organism: Heterodera glycines Gene Locus: chr1:1065578-1070950 Feature type: polypeptide

Protein Sequence

Length: 415

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.925	1.177	1.051	0.332	1.526	2.224	0.889	0.843	0.75	1.27	0.913	1.843	0.602	0.88	0.934	0.998	0.79	1.095	0.185	0.213	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_142	—	—	1.111	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.990

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.613	0.216	0.005	0.748	0.217	0.178	0.218	0.066	0.043	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001033	3.000	2.000	Hsc_gene_10352.t1;Hsc_gene_22293.t1	Hsc_gene_10352.t1	—	O61742.2 26S proteasome non-ATPase regulatory subunit 4 [Caenorhabditis elegans]	KAF7636355.1 VWFA domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.937\|GO:0110165_0.932\|GO:0005622_0.878\|GO:0008150_0.738\|GO:0016020_0.704\|GO:0043226_0.674\|GO:0003674_0.660\|GO:0043229_0.659\|GO:0005488_0.636\|GO:0043227_0.605\|GO:0005515_0.591\|GO:0043231_0.588\|GO:0009987_0.585\|GO:0032991_0.568\|GO:0008152_0.564\|GO:0043170_0.562\|GO:0044238_0.559\|GO:0005737_0.556\|GO:0005634_0.531\|GO:0019538_0.511	IPR002035+5-194_6-114+\|IPR003903+213-229_213-232_285-298_285-304+\|IPR036465+4-168_4-190+	SM00726+213-232_285-304+	PF02809+213-229_285-298+Ubiquitin_interaction_motif\|PF13519+6-114+von_Willebrand_factor_type_A_domain	G3DSA:3.40.50.410:FF:000005+3-191+26S_proteasome_non-ATPase_regulatory_subunit_4	PTHR10223+3-401+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	213-415	1.000	1-212	6wjn_b	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.537	45423.930	4.694	-14.500	27.229	4.819	52.771	47.229	12.289	14.940	50.843

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3385.197	5274.771	2726.348	3998.518	3951.625	2972.124	1987.025	2744.128	3840.543	3059.375	3394.162

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.181	-0.537	0.661	—	-0.396	-0.569	-0.220	-0.322	—	—	—	—	—

No JSON data available for plots.

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