Hg_chrom1_TN10mRNA_1460
Organism: Heterodera glycines Gene Locus: chr1:14383872-14388414 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 0.989 | 1.178 | 0.349 | 1.619 | 1.869 | 0.675 | 1.316 | 0.855 | 0.821 | 0.951 | 0.834 | 1.012 | 0.934 | 0.785 | 0.983 | 0.863 | 1.073 | 0.934 | 1.25 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1397
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.368
|
0.249
|
0.020
|
0.646
|
0.376
|
0.267
|
0.393
|
0.028
|
0.310
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001724
|
2.000
|
2.000
|
Hsc_gene_2477.t1;Hsc_gene_2477.t2
|
Hsc_gene_2477.t1;Hsc_gene_2477.t2
|
— |
Q7TNY6.3 Golgi resident protein GCP60 [Rattus norvegicus]
|
KAI3422141.1 CASH [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000062
|
GO:0005575_0.919|GO:0110165_0.914|GO:0005622_0.844|GO:0016020_0.827|GO:0043226_0.795|GO:0043229_0.779|GO:0005737_0.766|GO:0043227_0.743|GO:0071944_0.740|GO:0043231_0.722|GO:0005886_0.714|GO:0005773_0.605|GO:0012505_0.596|GO:0031090_0.571|GO:0098588_0.557|GO:0005794_0.555|GO:0000139_0.540
|
IPR000582+27-118_28-109+|IPR009038+330-492_348-493+|IPR014352+25-127+|IPR035984+28-116+|IPR036598+346-492+|IPR052269+18-494+
|
— |
PF00887+28-109+Acyl_CoA_binding_protein|PF13897+348-493+Golgi-dynamics_membrane-trafficking
|
— |
PTHR22973+18-494+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-442
|
2.000
|
1-183;443-494
|
6q68_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
55704.600
|
4.593
|
-23.500
|
28.947
|
11.741
|
52.632
|
47.368
|
12.753
|
16.194
|
49.798
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2075.119
|
3667.143
|
2990.655
|
2028.899
|
1679.818
|
1827.903
|
2268.269
|
3033.662
|
2290.641
|
799.536
|
1438.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.524
|
-0.991
|
-0.451
|
-0.305
|
0.137
|
0.322
|
0.629
|
-0.278
|
1.397
|
— | — | — | — |
No JSON data available for plots.