Hg_chrom1_TN10mRNA_1463
Organism: Heterodera glycines Gene Locus: chr1:14392305-14394187 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.613 | 1.84 | 0.698 | 0.331 | 0.959 | 1.845 | 0.343 | 1.559 | 1.172 | 0.875 | 1.526 | 1.27 | 1.266 | 1.015 | 1.272 | 1.439 | 0.865 | 0.69 | 0.369 | 0.776 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1399
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.706
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PTRKRRL,REEIARKKNQHRK,RKKPLIQNAFIAKKEVR,RKRRLKHNISQGKRTQR,RKAQQLKNIFPKDQERKKP,RKIEEQKKLREEIARKKNQ
|
43-119
|
0.677
|
— | — | — | — |
0.000
|
— | — |
0.902
|
0.051
|
0.008
|
0.295
|
0.012
|
0.011
|
0.021
|
0.077
|
0.011
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003065
|
1.000
|
2.000
|
Hsc_gene_2475.t1;Hsc_gene_2475.t2
|
Hsc_gene_2475.t1;Hsc_gene_2475.t2
|
— |
P30651.2 Uncharacterized protein ZK643.5 [Caenorhabditis elegans]
|
KAI3422140.1 hypothetical protein GPALN_012673 [Globodera pallida]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;179-339
|
2.000
|
4-178;340-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
48046.430
|
10.532
|
34.500
|
29.017
|
10.791
|
59.472
|
40.528
|
19.424
|
9.592
|
46.043
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1715.320
|
791.327
|
1526.032
|
1575.899
|
1677.775
|
1307.154
|
930.027
|
1382.913
|
2503.101
|
2180.527
|
2318.773
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
0.857
|
0.155
|
— |
-0.345
|
-0.484
|
— |
-0.432
|
— | — | — | — | — |
No JSON data available for plots.