Hg_chrom1_TN10mRNA_1465
Organism: Heterodera glycines Gene Locus: chr1:14397708-14400113 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 1.644 | 0.689 | 0.522 | 0.8 | 1.166 | 0.541 | 1.136 | 1.178 | 1.229 | 0.689 | 0.743 | 1.333 | 1.263 | 0.979 | 1.696 | 0.994 | 0.803 | 1.36 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1401
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
FKRR
|
6-44
|
0.938
|
— | — | — | — |
0.000
|
— | — |
0.265
|
0.412
|
0.104
|
0.559
|
0.391
|
0.450
|
0.502
|
0.206
|
0.289
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006119
|
1.000
|
1.000
|
Hsc_gene_2473.t1
|
Hsc_gene_2473.t1
|
— |
H2KZK4.1 Desumoylating isopeptidase 1 homolog [Caenorhabditis elegans]
|
KAI1720692.1 PPPDE putative peptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008233
|
GO:0008150_0.570|GO:0003674_0.555
|
IPR008580+126-350_127-272_127-273_128-272+|IPR042266+122-282+
|
SM01179+127-273+
|
PF05903+128-272+PPPDE_putative_peptidase_domain
|
— |
PTHR12378+126-350+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
289-396
|
1.000
|
1-288
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.917
|
43857.470
|
8.244
|
7.500
|
20.202
|
11.111
|
49.747
|
50.253
|
11.616
|
8.586
|
54.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1165.651
|
899.823
|
808.351
|
749.949
|
981.692
|
1925.170
|
1654.199
|
2689.405
|
364.783
|
1185.413
|
833.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.385
|
-0.400
|
— |
0.357
|
0.986
|
-0.208
|
— |
-0.555
|
— | — | — | — | — |
No JSON data available for plots.