Hg_chrom1_TN10mRNA_1471
Organism: Heterodera glycines Gene Locus: chr1:14423586-14426033 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.377 | 1.087 | 1.246 | 0.645 | 1.765 | 1.038 | 0.445 | 1.246 | 0.831 | 0.926 | 1.605 | 2.566 | 0.952 | 0.779 | 1.399 | 0.534 | 0.204 | 0.614 | 0.0 | 1.466 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1407
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KKHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.607
|
0.346
|
0.054
|
0.626
|
0.226
|
0.161
|
0.243
|
0.032
|
0.110
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006123
|
1.000
|
1.000
|
Hsc_gene_2464.t1
|
Hsc_gene_2464.t1
|
— |
O16259.1 Stress-induced-phosphoprotein 1 [Caenorhabditis elegans]
|
KAI3422130.1 Hsp90 cochaperone [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.812|GO:0110165_0.767|GO:0005622_0.711|GO:0008150_0.646|GO:0003674_0.609|GO:0005737_0.599|GO:0005488_0.554
|
IPR006636+270-309+|IPR011990+3-130_4-129_131-255_141-253+|IPR019734+6-39_40-73_81-114_141-174_175-208_209-242_210-242+|IPR041243+265-312+
|
SM00028+6-39_40-73_81-114_141-174_175-208_209-242+|SM00727+270-309+
|
PF13181+210-242+Tetratricopeptide_repeat|PF13414+148-183+TPR_repeat|PF13424+43-108+Tetratricopeptide_repeat|PF17830+265-312+STI1/HOP,_DP_domain
|
G3DSA:1.10.260.100:FF:000002+253-321+Stress-induced-phosphoprotein_1_(Hsp70/Hsp90-organizing)|G3DSA:1.25.40.10:FF:000010+3-133+Stress-induced_phosphoprotein_1|G3DSA:1.25.40.10:FF:000027+138-257+stress-induced-phosphoprotein_1_isoform_X1
|
PTHR22904+3-140+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;228-321
|
1.000
|
2-227
|
7kw7_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
37127.250
|
7.397
|
4.000
|
37.383
|
10.903
|
51.090
|
48.910
|
19.938
|
17.445
|
42.056
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
3325.604
|
4716.419
|
1894.606
|
4130.679
|
4747.379
|
2786.620
|
3384.418
|
2626.809
|
2285.214
|
3728.007
|
3109.667
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.545
|
-0.328
|
1.233
|
0.168
|
-0.754
|
0.292
|
— | — | — | — | — | — | — |
No JSON data available for plots.