Hg_chrom1_TN10mRNA_1473
Organism: Heterodera glycines Gene Locus: chr1:14428966-14430366 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 0.35 | 0.775 | 0.346 | 1.378 | 1.285 | 0.298 | 1.504 | 0.835 | 1.219 | 0.835 | 1.179 | 0.627 | 1.35 | 3.58 | 0.823 | 1.602 | 0.494 | 0.578 | 0.147 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1409
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRKR,KRHLEAMLEERRRKEE,KLRRQRRAVEELAKAKGPRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.349
|
0.492
|
0.005
|
0.731
|
0.045
|
0.016
|
0.045
|
0.066
|
0.084
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006125
|
1.000
|
1.000
|
Hsc_gene_2462.t1
|
— | — | — |
KAI3422128.1 Sphingosine kinase 2 [Globodera pallida]
|
No
|
-0.470
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.918|GO:0110165_0.908|GO:0005622_0.882|GO:0043226_0.838|GO:0016020_0.837|GO:0043229_0.825|GO:0043227_0.757|GO:0043228_0.742|GO:0043232_0.742|GO:0005737_0.717|GO:0032991_0.717|GO:0005886_0.658|GO:0071944_0.658|GO:0005856_0.594|GO:0042995_0.588|GO:0098590_0.586|GO:0099080_0.586|GO:0120025_0.586|GO:0015630_0.583|GO:0030990_0.569|GO:0005929_0.567|GO:0099081_0.567|GO:0099512_0.567|GO:0099513_0.564|GO:0005874_0.560|GO:0140535_0.555|GO:0005930_0.549|GO:0032838_0.549|GO:0097014_0.549|GO:0099568_0.549|GO:0035869_0.540|GO:0097539_0.540|GO:0097546_0.540
|
IPR019579+280-389+|IPR051655+294-396+
|
— |
PF10595+280-389+Protein_FAM161A/B
|
— |
PTHR21501+294-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-399
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
46909.720
|
11.920
|
48.000
|
38.596
|
6.516
|
60.652
|
39.348
|
26.065
|
12.531
|
42.356
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
199.742
|
1280.919
|
430.821
|
166.983
|
50.609
|
53.186
|
32.132
|
140.794
|
85.200
|
1.679
|
37.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.803
|
-3.077
|
-1.258
|
-1.755
|
— |
-0.720
|
1.304
|
-1.992
|
— | — | — | — | — |
No JSON data available for plots.