SCN Proteipedia

Hg_chrom1_TN10mRNA_1474

Organism: Heterodera glycines Gene Locus: chr1:14430939-14433362 Feature type: polypeptide

Protein Sequence

Length: 547

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.978	0.468	0.698	0.756	1.158	0.891	0.718	1.463	0.894	1.754	0.222	1.398	1.777	1.758	1.754	1.489	0.3	0.665	1.266	0.269	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1410	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	4-25	0.996	—	—	0.000	—	—	0.309	0.394	0.224	0.522	0.337	0.183	0.304	0.067	0.245	0.122

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006126	1.000	1.000	Hsc_gene_2461.t1	Hsc_gene_2461.t1	—	Q9NYA1.1 Sphingosine kinase 1 [Homo sapiens]	KAI3422128.1 Sphingosine kinase 2 [Globodera pallida]	No	-0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016301	GO:0008150_0.946\|GO:0009987_0.895\|GO:0005575_0.850\|GO:0110165_0.838\|GO:0003674_0.791\|GO:0016020_0.774\|GO:0008152_0.730\|GO:0065007_0.719\|GO:0044237_0.709\|GO:0044238_0.707\|GO:0050789_0.702\|GO:0005622_0.690\|GO:0003824_0.656\|GO:0050896_0.636\|GO:0016740_0.632\|GO:0043226_0.630\|GO:0005737_0.619\|GO:0006629_0.618\|GO:0043229_0.617\|GO:0044255_0.614\|GO:0043227_0.604\|GO:0016772_0.599\|GO:0016301_0.596\|GO:0001727_0.590\|GO:0043231_0.589\|GO:0050794_0.588\|GO:0016773_0.575\|GO:0008481_0.570\|GO:0017050_0.570\|GO:0071944_0.567\|GO:0005886_0.554\|GO:0051716_0.531\|GO:0009058_0.528\|GO:0005488_0.519\|GO:0048518_0.517\|GO:0007154_0.513\|GO:0023052_0.512\|GO:0044249_0.510	IPR001206+157-265_161-266_161-298+\|IPR016064+161-521+\|IPR017438+153-281+\|IPR050187+160-519+	SM00046+161-298+	PF00781+161-266+Diacylglycerol_kinase_catalytic_domain	—	PTHR12358+160-519+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	542-547	1.000	1-541	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.811	61063.190	6.916	4.000	23.766	11.883	41.499	58.501	12.980	10.786	48.263

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	1527.049	3940.796	2000.684	1329.916	831.640	1527.326	1905.128	4226.501	575.854	338.201	440.052

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.209	-1.704	-0.479	-0.710	0.892	0.329	1.368	-1.009	—	—	—	—	—

No JSON data available for plots.

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