SCN Proteipedia

Hg_chrom1_TN10mRNA_1476

Organism: Heterodera glycines Gene Locus: chr1:14435699-14439360 Feature type: polypeptide

Protein Sequence

Length: 767

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.773	1.031	0.806	0.405	1.825	0.568	0.574	1.434	1.043	1.251	1.442	1.304	1.231	0.903	1.57	0.969	0.919	0.612	1.304	0.537	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1412	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.947

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRK,RKRR,RRTKRKG,KTAKRMA,KRMAERVWKNWRRLIR,KKINKCNEKEGKGKLKKE	41-61	0.998	—	—	—	—	0.000	—	—	0.757	0.129	0.008	0.263	0.050	0.011	0.029	0.006	0.035	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003068	1.000	2.000	Hsc_gene_2459.t1;Hsc_gene_2459.t2	Hsc_gene_2459.t1;Hsc_gene_2459.t2	—	Q01831.4 DNA repair protein complementing XP-C cells [Homo sapiens]	KAI1715540.1 rad4 beta-hairpin domain 3 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003684\|GO:0005634\|GO:0006289	GO:0008150_0.948\|GO:0009987_0.899\|GO:0005575_0.823\|GO:0110165_0.823\|GO:0050896_0.786\|GO:0008152_0.774\|GO:0044238_0.770\|GO:0005622_0.766\|GO:0043170_0.765\|GO:0051716_0.759\|GO:0016020_0.755\|GO:0006139_0.733\|GO:0043226_0.733\|GO:0090304_0.722\|GO:0006950_0.718\|GO:0043229_0.703\|GO:0033554_0.692\|GO:0006259_0.682\|GO:0006974_0.679\|GO:0006281_0.674\|GO:0043227_0.660\|GO:0043231_0.635\|GO:0071840_0.578\|GO:0016043_0.566\|GO:0006289_0.538\|GO:0003674_0.529\|GO:0005634_0.525\|GO:0006996_0.512\|GO:0065007_0.509	IPR004583+3-763+\|IPR018325+392-517+\|IPR018326+529-583_531-582+\|IPR018327+585-640_590-639+\|IPR018328+648-720_648-722+\|IPR036985+215-530+\|IPR038765+419-544+\|IPR042488+654-727+	SM01030+529-583+\|SM01031+585-640+\|SM01032+648-722+	PF03835+392-517+Rad4_transglutaminase-like_domain\|PF10403+531-582+Rad4_beta-hairpin_domain_1\|PF10404+590-639+Rad4_beta-hairpin_domain_2\|PF10405+648-720+Rad4_beta-hairpin_domain_3	G3DSA:3.30.70.2460:FF:000001+654-726+DNA_repair_protein_Rad4_family	PTHR12135+3-763+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-172;360-419	2.000	173-359;420-767	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.757	88580.010	9.390	25.000	35.463	10.821	54.498	45.502	20.078	15.385	42.634

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	2093.240	2618.114	2092.847	2111.105	1941.704	1610.139	1741.261	1893.113	2588.334	1963.569	2231.325

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.553	-0.447	0.121	-0.152	-0.256	—	—	—	—	—	—	—	—

No JSON data available for plots.

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