Hg_chrom1_TN10mRNA_1477
Organism: Heterodera glycines Gene Locus: chr1:14439793-14444170 Feature type: polypeptideProtein Sequence
Length: 670
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 0.625 | 0.814 | 0.823 | 1.045 | 0.459 | 0.8 | 1.493 | 1.26 | 0.928 | 0.678 | 1.668 | 1.368 | 1.464 | 1.34 | 1.087 | 0.979 | 1.153 | 0.804 | 1.141 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1413
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
plastid
|
— | — |
17-37
|
0.958
|
47-84
|
0.997
|
— | — |
0.002
|
— | — |
0.206
|
0.470
|
0.814
|
0.362
|
0.187
|
0.327
|
0.233
|
0.060
|
0.188
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006128
|
1.000
|
1.000
|
Hsc_gene_2458.t1
|
Hsc_gene_2458.t1;Hsc_gene_2458.t2
|
— |
Q0P4F7.1 Medium-chain acyl-CoA ligase ACSF2, mitochondrial [Danio rerio]
|
KAI1719468.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.716|GO:0005575_0.703|GO:0110165_0.703|GO:0008150_0.660|GO:0003824_0.628|GO:0005622_0.591|GO:0005737_0.565|GO:0016020_0.525|GO:0008152_0.515|GO:0009987_0.508
|
IPR000873+123-517+|IPR020845+308-319+|IPR025110+568-645+|IPR042099+105-550+|IPR045851+554-657+
|
— |
PF00501+123-517+AMP-binding_enzyme|PF13193+568-645+AMP-binding_enzyme_C-terminal_domain
|
G3DSA:3.30.300.30:FF:000008+554-659+2,3-dihydroxybenzoate-AMP_ligase|G3DSA:3.40.50.12780:FF:000003+106-554+Long-chain-fatty-acid--CoA_ligase_FadD
|
PTHR43201+101-657+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-670
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
74682.680
|
7.735
|
12.000
|
24.776
|
12.836
|
42.836
|
57.164
|
14.030
|
10.746
|
52.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
purple
|
2625.484
|
901.771
|
5711.803
|
2061.588
|
2447.901
|
4603.710
|
5816.706
|
5198.592
|
704.022
|
930.201
|
833.267
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.434
|
1.055
|
-1.362
|
0.215
|
0.927
|
0.348
|
— |
0.306
|
— | — | — | — | — |
No JSON data available for plots.