Hg_chrom1_TN10mRNA_1478
Organism: Heterodera glycines Gene Locus: chr1:14444492-14445913 Feature type: polypeptideProtein Sequence
Length: 340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 0.889 | 1.123 | 0.203 | 0.931 | 0.679 | 0.665 | 0.294 | 1.438 | 0.914 | 0.936 | 1.384 | 1.225 | 1.244 | 2.101 | 1.597 | 0.964 | 0.98 | 0.679 | 0.346 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1414
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.648
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRSRPAIPGDWDNRRWEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.876
|
0.096
|
0.009
|
0.548
|
0.012
|
0.034
|
0.031
|
0.535
|
0.050
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006129
|
1.000
|
1.000
|
Hsc_gene_2457.t1
|
Hsc_gene_2457.t1
|
— |
A0JPQ7.1 Uncharacterized protein C19orf47 homolog [Rattus norvegicus]
|
KAH7721630.1 Sterile alpha motif containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.922|GO:0110165_0.916|GO:0005622_0.869|GO:0016020_0.854|GO:0043226_0.837|GO:0043229_0.837|GO:0043227_0.783|GO:0043231_0.775|GO:0005634_0.684|GO:0031974_0.594|GO:0031981_0.594|GO:0043233_0.594|GO:0070013_0.594|GO:0005654_0.565
|
IPR013761+5-68_20-70+|IPR039161+7-91+
|
— |
PF18017+7-65+SAM_domain_(Sterile_alpha_motif)
|
— |
PTHR21359+7-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
65-178
|
2.000
|
1-64;179-340
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.884
|
38020.360
|
10.698
|
17.000
|
28.824
|
7.059
|
52.353
|
47.647
|
17.059
|
11.765
|
52.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
violet
|
1290.338
|
1225.008
|
1043.349
|
1213.787
|
1258.316
|
1039.635
|
1748.549
|
1375.169
|
1040.390
|
1526.007
|
1317.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.460
|
-0.150
|
0.326
|
— |
-0.261
|
0.761
|
0.300
|
0.489
|
— | — | — | — | — |
No JSON data available for plots.