Hg_chrom1_TN10mRNA_148
Organism: Heterodera glycines Gene Locus: chr1:1078217-1082288 Feature type: polypeptideProtein Sequence
Length: 187
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.617 | 0.622 | 1.458 | 0.369 | 0.535 | 1.097 | 1.019 | 1.07 | 1.664 | 1.301 | 0.891 | 0.629 | 0.594 | 0.617 | 0.873 | 0.611 | 0.877 | 1.62 | 0.0 | 0.629 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_143
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal|peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.453
|
0.386
|
0.158
|
0.754
|
0.355
|
0.158
|
0.158
|
0.351
|
0.112
|
0.211
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002876
|
2.000
|
1.000
|
Hsc_gene_20312.t1
|
Hsc_gene_20312.t1
|
— |
P90994.1 Glutathione-independent glyoxalase DJR-1.1 [Caenorhabditis elegans]
|
KAF7632800.1 DJ-1_PfpI domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.885|GO:0005575_0.826|GO:0110165_0.814|GO:0009987_0.810|GO:0005622_0.730|GO:0005737_0.730|GO:0016020_0.648|GO:0008152_0.631|GO:0050896_0.608|GO:0044237_0.597|GO:0043226_0.593|GO:0009058_0.588|GO:0043229_0.573|GO:0044281_0.559|GO:0043227_0.553|GO:0043231_0.551|GO:0051716_0.523|GO:0065007_0.505
|
IPR002818+4-169+|IPR006287+6-181+|IPR029062+1-187_4-186+|IPR050325+4-184+
|
— |
PF01965+4-169+DJ-1/PfpI_family
|
G3DSA:3.40.50.880:FF:000022+2-187+protein_deglycase_DJ-1
|
PTHR48094+4-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-187
|
4e08_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
19687.660
|
6.481
|
0.000
|
23.529
|
6.417
|
40.107
|
59.893
|
12.299
|
11.230
|
57.754
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1200.053
|
424.134
|
875.974
|
1111.484
|
1470.057
|
1342.868
|
1346.833
|
966.256
|
1800.500
|
1073.253
|
1384.930
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
1.253
|
0.452
|
0.371
|
— | — |
-0.580
|
0.622
|
— | — | — | — | — |
No JSON data available for plots.