Hg_chrom1_TN10mRNA_1481
Organism: Heterodera glycines Gene Locus: chr1:14452236-14454905 Feature type: polypeptideProtein Sequence
Length: 454
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 0.717 | 0.841 | 0.532 | 0.808 | 0.904 | 0.813 | 0.881 | 1.468 | 1.161 | 1.101 | 1.166 | 1.958 | 1.017 | 1.259 | 0.503 | 0.939 | 1.035 | 3.05 | 1.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1417
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KGGKHHKPPG,RRWVILFPEGGFYYKRKET
|
23-49
|
0.934
|
— | — | — | — |
0.000
|
— | — |
0.116
|
0.308
|
0.077
|
0.155
|
0.877
|
0.264
|
0.456
|
0.005
|
0.247
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006132
|
1.000
|
1.000
|
Hsc_gene_2453.t1
|
Hsc_gene_2453.t1;Hsc_gene_2453.t2
|
— |
Q91YX5.1 Acyl-CoA:lysophosphatidylglycerol acyltransferase 1 [Mus musculus]
|
KAH7730227.1 CBN-ACL-14 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746
|
GO:0008150_0.901|GO:0009987_0.845|GO:0003674_0.791|GO:0005575_0.737|GO:0110165_0.737|GO:0008152_0.720|GO:0044238_0.701|GO:0044237_0.696|GO:0003824_0.682|GO:0006629_0.664|GO:0016020_0.656|GO:0044255_0.653|GO:0006793_0.648|GO:0006796_0.648|GO:0019637_0.647|GO:0071944_0.641|GO:0005886_0.638|GO:0006644_0.635|GO:0016740_0.605|GO:0005622_0.596|GO:0009058_0.589|GO:0046486_0.588|GO:0006650_0.587|GO:0043226_0.583|GO:0016746_0.577|GO:0044249_0.570|GO:0043229_0.569|GO:0005737_0.566|GO:0008610_0.555|GO:0043227_0.522|GO:0005773_0.518|GO:0016747_0.518|GO:0043231_0.518|GO:0071617_0.508
|
IPR002123+128-232_135-259+|IPR032098+335-388+
|
SM00563+135-259+
|
PF01553+128-232+Acyltransferase|PF16076+335-388+Acyltransferase_C-terminus
|
— |
PTHR10983+42-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
53190.880
|
9.779
|
22.000
|
24.670
|
17.841
|
40.529
|
59.471
|
15.198
|
9.471
|
43.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2196.765
|
3062.029
|
1989.967
|
1545.398
|
1570.388
|
2160.556
|
2376.238
|
2911.189
|
2294.043
|
2034.404
|
2145.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.851
|
-1.124
|
-0.256
|
— |
0.475
|
— |
0.327
|
— | — | — | — | — | — |
No JSON data available for plots.