SCN Proteipedia

Hg_chrom1_TN10mRNA_1482

Organism: Heterodera glycines Gene Locus: chr1:14454943-14458669 Feature type: polypeptide

Protein Sequence

Length: 701

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.514	1.095	1.167	0.295	1.189	0.988	0.713	1.141	1.3	1.484	1.102	1.846	1.981	0.823	1.223	0.897	0.585	0.973	0.658	0.755	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1418	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.573

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRAR,RKQMPSMIGKEKKKKEL,KKDQDVLETVSEGLKKIYK	63-84	0.984	—	—	—	—	0.000	—	—	0.301	0.237	0.136	0.403	0.318	0.280	0.227	0.199	0.247	0.120

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006133	1.000	1.000	Hsc_gene_2452.t1	Hsc_gene_2452.t1	—	Q9NZN3.2 EH domain-containing protein 3 [Homo sapiens]	KAI3422119.1 3-hydroxyisobutyryl-CoA hydrolase [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005515\|GO:0005525	GO:0005575_0.907\|GO:0110165_0.902\|GO:0008150_0.893\|GO:0005622_0.835\|GO:0009987_0.830\|GO:0016020_0.798\|GO:0005737_0.771\|GO:0071944_0.715\|GO:0043226_0.710\|GO:0005886_0.705\|GO:0043229_0.686\|GO:0051179_0.665\|GO:0006810_0.649\|GO:0051234_0.649\|GO:0043227_0.646\|GO:0043231_0.625\|GO:0071840_0.619\|GO:0016043_0.607\|GO:0003674_0.567\|GO:0016192_0.537\|GO:0065007_0.532\|GO:0051641_0.521\|GO:0050789_0.514	IPR000261+568-661_573-663_574-662_578-643+\|IPR002048+606-641+\|IPR011992+573-660+\|IPR018247+619-631+\|IPR027417+168-376_176-400+\|IPR030381+170-401+\|IPR031692+139-170+\|IPR040990+403-509+\|IPR045063+176-335+	SM00027+568-661+	PF00350+176-335+Dynamin_family\|PF12763+573-663+Cytoskeletal-regulatory_complex_EF_hand\|PF16880+139-170+N-terminal_EH-domain_containing_protein\|PF18150+403-509+Domain_of_unknown_function_(DUF5600)	G3DSA:1.10.238.10:FF:000038+562-664+EH_domain-containing_protein_3\|G3DSA:3.40.50.300:FF:000147+176-400+EH_domain-containing_protein_1	PTHR11216+559-668+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-701	7sox_P	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.645	80773.060	7.210	6.000	29.101	12.839	47.504	52.496	15.549	13.552	42.939

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	yellow	3310.663	2366.009	3063.859	3334.593	3930.805	5747.177	4304.032	5223.736	3211.936	1586.369	2283.040

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.145	0.358	0.229	0.205	0.563	-0.408	—	—	—	—	—	—	—

No JSON data available for plots.

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