Hg_chrom1_TN10mRNA_1485
Organism: Heterodera glycines Gene Locus: chr1:14463926-14465670 Feature type: polypeptideProtein Sequence
Length: 240
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.357 | 0.833 | 1.293 | 1.875 | 1.068 | 0.843 | 0.833 | 0.833 | 1.182 | 0.884 | 0.735 | 0.926 | 0.962 | 1.786 | 0.774 | 1.025 | 0.694 | 0.0 | 0.123 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1421
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.930
|
0.999
|
0.000
|
0.000
|
0.249
|
0.431
|
0.101
|
0.170
|
0.096
|
0.029
|
0.066
|
0.016
|
0.316
|
0.970
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006136
|
1.000
|
1.000
|
Hsc_gene_2449.t1
|
Hsc_gene_2449.t1
|
— |
Q9H772.1 Gremlin-2 [Homo sapiens]
|
KAF7634686.1 CTCK domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.859|GO:0005575_0.833|GO:0110165_0.830|GO:0032501_0.694|GO:0032502_0.677|GO:0048856_0.677|GO:0065007_0.676|GO:0050789_0.665|GO:0009987_0.664|GO:0050794_0.653|GO:0007275_0.649|GO:0050896_0.612|GO:0051716_0.585|GO:0003674_0.573|GO:0005488_0.567|GO:0048519_0.551|GO:0009653_0.541|GO:0048523_0.535|GO:0005515_0.525|GO:0048583_0.514
|
IPR004133+121-214+|IPR006207+129-217+|IPR029034+109-222+
|
SM00041+129-217+
|
PF03045+121-214+DAN_domain
|
— |
PTHR15283+126-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-111;223-240
|
1.000
|
112-222
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
26624.920
|
6.144
|
-1.000
|
32.083
|
5.417
|
53.750
|
46.250
|
16.250
|
15.833
|
50.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
643.716
|
64.139
|
130.023
|
822.678
|
1358.549
|
2229.532
|
964.263
|
646.081
|
118.588
|
396.591
|
277.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
3.545
|
2.772
|
0.692
|
0.728
|
-1.196
|
-1.901
|
0.727
|
— | — | — | — | — |