Hg_chrom1_TN10mRNA_1486
Organism: Heterodera glycines Gene Locus: chr1:14466521-14470328 Feature type: polypeptideProtein Sequence
Length: 927
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.966 | 1.029 | 0.785 | 0.446 | 0.881 | 2.019 | 0.668 | 1.241 | 0.503 | 0.729 | 0.637 | 1.713 | 0.839 | 1.763 | 1.541 | 2.065 | 0.867 | 0.637 | 0.415 | 0.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1422
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRSLMSDLRRLREQKK
|
— | — |
27-59
|
0.998
|
— | — |
0.000
|
— | — |
0.379
|
0.199
|
0.023
|
0.653
|
0.100
|
0.180
|
0.084
|
0.171
|
0.314
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001081
|
1.000
|
4.000
|
Hsc_gene_2447.t1;Hsc_gene_2447.t2;Hsc_gene_2447.t3;Hsc_gene_2447.t4
|
Hsc_gene_2447.t1;Hsc_gene_2447.t2;Hsc_gene_2447.t3;Hsc_gene_2447.t4
|
— | — |
KAH7730231.1 Protein F53C11.5 b [Aphelenchus avenae]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-59;120-927
|
1.000
|
60-119
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
101237.140
|
9.772
|
31.500
|
23.840
|
7.443
|
55.879
|
44.121
|
14.239
|
9.601
|
57.066
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
1942.304
|
2599.501
|
1907.052
|
1643.362
|
2049.409
|
2371.377
|
4208.457
|
1926.390
|
959.458
|
1513.407
|
1276.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.677
|
-0.799
|
— |
0.287
|
0.225
|
0.838
|
-0.404
|
1.270
|
— | — | — | — | — |
No JSON data available for plots.