Hg_chrom1_TN10mRNA_1489
Organism: Heterodera glycines Gene Locus: chr1:14477777-14479148 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.456 | 1.368 | 1.07 | 0.845 | 1.389 | 0.754 | 0.759 | 1.716 | 1.525 | 1.325 | 0.668 | 0.577 | 0.953 | 0.943 | 1.501 | 1.05 | 0.241 | 0.891 | 1.508 | 1.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1425
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.641
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.423
|
0.404
|
0.024
|
0.705
|
0.123
|
0.150
|
0.150
|
0.292
|
0.072
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006139
|
1.000
|
1.000
|
Hsc_gene_2440.t1
|
Hsc_gene_2440.t1
|
— |
Q5SPB6.1 Glutathione-specific gamma-glutamylcyclotransferase 1 [Danio rerio]
|
KAI1719488.1 chaC-like protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006751|GO:0061928
|
GO:0008150_0.854|GO:0009987_0.793|GO:0005575_0.704|GO:0110165_0.701|GO:0003674_0.683|GO:0005622_0.676|GO:0008152_0.650|GO:0005737_0.620|GO:0044237_0.619|GO:0006790_0.510|GO:0006575_0.506|GO:0006749_0.506|GO:0043603_0.506|GO:0003824_0.501
|
IPR006840+1-171_1-175+|IPR013024+3-99+|IPR036568+1-112+
|
— |
PF04752+1-171+ChaC-like_protein
|
— |
PTHR12192+1-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
23790.870
|
6.148
|
-1.500
|
29.412
|
15.196
|
47.059
|
52.941
|
15.196
|
14.216
|
44.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
tan
|
747.702
|
741.067
|
503.258
|
621.991
|
669.888
|
1300.858
|
750.128
|
1953.147
|
984.671
|
80.065
|
467.754
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.788
|
-0.390
|
0.414
|
— |
0.973
|
-0.785
|
0.481
|
-1.239
|
3.482
|
— | — | — | — |
No JSON data available for plots.