Hg_chrom1_TN10mRNA_1492
Organism: Heterodera glycines Gene Locus: chr1:14483984-14485813 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 1.068 | 0.881 | 0.792 | 1.488 | 1.047 | 0.79 | 0.765 | 0.964 | 1.034 | 0.966 | 1.05 | 1.488 | 1.177 | 0.989 | 1.276 | 0.627 | 1.353 | 0.589 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1428
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.495
|
0.424
|
0.184
|
0.687
|
0.292
|
0.113
|
0.194
|
0.151
|
0.032
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006141
|
1.000
|
1.000
|
Hsc_gene_2437.t1
|
Hsc_gene_2437.t1
|
— |
Q9I7I7.1 NAD-dependent protein deacetylase Sirt2 [Drosophila melanogaster]
|
KAI3422110.1 NAD-dependent protein deacetylase sirtuin-2 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070403
|
GO:0008150_0.939|GO:0009987_0.886|GO:0005575_0.868|GO:0110165_0.858|GO:0005622_0.802|GO:0016020_0.716|GO:0043226_0.705|GO:0003674_0.704|GO:0065007_0.669|GO:0043229_0.660|GO:0050789_0.660|GO:0008152_0.654|GO:0071840_0.641|GO:0043227_0.615|GO:0043170_0.611|GO:0016043_0.605|GO:0050794_0.596|GO:0043231_0.574|GO:0003824_0.567|GO:0044238_0.541|GO:0005737_0.535|GO:0044237_0.533|GO:0048519_0.521
|
IPR003000+133-316+|IPR026590+107-374+|IPR026591+139-288+|IPR029035+101-385+|IPR050134+114-371+
|
— |
PF02146+133-316+Sir2_family
|
— |
PTHR11085+114-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-80
|
1.000
|
81-392
|
9ktk_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
43404.210
|
5.111
|
-7.000
|
26.531
|
9.439
|
47.959
|
52.041
|
12.755
|
13.776
|
52.551
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1477.979
|
1564.863
|
1500.317
|
1064.008
|
1070.020
|
1446.762
|
1585.072
|
1971.095
|
1005.890
|
1885.940
|
1508.776
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.291
|
-0.694
|
-0.387
|
— |
0.450
|
— |
0.339
|
— | — | — | — | — | — |
No JSON data available for plots.