Hg_chrom1_TN10mRNA_1497
Organism: Heterodera glycines Gene Locus: chr1:14502101-14504524 Feature type: polypeptideProtein Sequence
Length: 477
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.097 | 0.926 | 0.762 | 0.434 | 0.804 | 1.236 | 0.799 | 2.201 | 1.211 | 0.963 | 0.858 | 1.357 | 1.456 | 0.806 | 1.326 | 1.228 | 1.272 | 0.858 | 0.806 | 0.247 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1433
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.196
|
0.193
|
0.095
|
0.193
|
0.814
|
0.349
|
0.564
|
0.207
|
0.308
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003069
|
2.000
|
1.000
|
Hsc_gene_2430.t1
|
Hsc_gene_2472.t1;Hsc_gene_2472.t2
|
— |
A8WYE4.1 Serine/threonine-protein kinase par-1 [Caenorhabditis briggsae]
|
KAH7695178.1 CAMK/CAMKL/MARK protein kinase, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0004672|GO:0005524|GO:0005840|GO:0006412|GO:0006468
|
GO:0008150_0.903|GO:0005575_0.862|GO:0110165_0.854|GO:0009987_0.837|GO:0003674_0.716|GO:0005622_0.711|GO:0065007_0.702|GO:0050789_0.683|GO:0050794_0.671|GO:0005488_0.626|GO:0016020_0.620|GO:0008152_0.607|GO:0043226_0.598|GO:0044237_0.575|GO:0043170_0.566|GO:0043229_0.566|GO:0044238_0.562|GO:0005737_0.545|GO:0003824_0.523|GO:0050896_0.516
|
IPR000719+66-120+|IPR011009+63-120+|IPR013810+134-196_147-195+|IPR017441+72-95+
|
— |
PF00069+66-120+Protein_kinase_domain|PF00333+134-196+Ribosomal_protein_S5,_N-terminal_domain
|
G3DSA:3.30.200.20:FF:000003+50-122+Non-specific_serine/threonine_protein_kinase
|
PTHR24346+20-120+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;461-477
|
1.000
|
65-460
|
3iec_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
52655.810
|
10.224
|
25.500
|
25.577
|
11.530
|
50.734
|
49.266
|
16.562
|
9.015
|
51.782
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
947.931
|
770.682
|
832.962
|
849.411
|
1024.785
|
960.600
|
1267.183
|
1071.882
|
308.297
|
1374.410
|
917.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.137
|
0.239
|
— |
0.409
|
— |
0.384
|
— | — | — | — | — |
No JSON data available for plots.