SCN Proteipedia

Hg_chrom1_TN10mRNA_1498

Organism: Heterodera glycines Gene Locus: chr1:14504713-14513248 Feature type: polypeptide

Protein Sequence

Length: 1,975

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.03	1.189	1.077	0.21	2.127	1.883	0.5	0.937	0.968	1.464	1.427	1.102	0.788	0.292	1.343	0.781	0.573	0.69	0.506	0.506	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1434	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRKL,KRAKQELEKAKRKTE,KKQKGFDKIIDEWRKKCD,RRHQETDKNYRKAERRVKE	—	—	—	—	—	—	0.000	—	—	0.223	0.223	0.018	0.731	0.051	0.110	0.178	0.015	0.342	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006144	1.000	1.000	Hsc_gene_2433.t1	Hsc_gene_2433.t1	—	Q60LV4.1 Myosin-3 [Caenorhabditis briggsae]	KAI1719529.1 myosin head (motor domain) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003774\|GO:0005524\|GO:0016459\|GO:0051015	GO:0005575_0.913\|GO:0110165_0.909\|GO:0005622_0.887\|GO:0043226_0.842\|GO:0043229_0.798\|GO:0008150_0.787\|GO:0005737_0.760\|GO:0043228_0.704\|GO:0043232_0.704\|GO:0099080_0.636\|GO:0099081_0.618\|GO:0099512_0.618\|GO:0005856_0.584\|GO:0032991_0.582\|GO:0009987_0.549\|GO:0003674_0.520	IPR001609+82-794_88-793_90-781_118-137_174-199_230-257_462-490_516-544+\|IPR002928+860-1938+\|IPR004009+35-78_35-84+\|IPR008989+33-83+\|IPR014751+1581-1633_1634-1679_1680-1731_1743-1787+\|IPR027417+60-852+\|IPR036961+86-722+	SM00242+82-794+	PF00063+90-781+Myosin_head_(motor_domain)\|PF01576+860-1938+Myosin_tail\|PF02736+35-78+Myosin_N-terminal_SH3-like_domain	G3DSA:1.10.10.820:FF:000001+286-342+Myosin_heavy_chain\|G3DSA:1.20.120.720:FF:000001+343-451+Myosin_heavy_chain,_muscle\|G3DSA:1.20.5.340:FF:000019+854-976+Myosin_heavy_chain,_isoform_G\|G3DSA:1.20.5.340:FF:000021+1083-1201+Myosin_heavy_chain,_isoform_G\|G3DSA:1.20.5.340:FF:000025+1366-1482+Myosin_heavy_chain,_isoform_G\|G3DSA:1.20.5.340:FF:000036+977-1082+Myosin_heavy_chain\|G3DSA:1.20.5.370:FF:000008+1538-1584+Myosin_heavy_chain\|G3DSA:1.20.5.370:FF:000009+1585-1634+Myosin_heavy_chain,_isoform_G\|G3DSA:1.20.5.370:FF:000010+1743-1787+Myosin_heavy_chain,_isoform_G\|G3DSA:1.20.5.4820:FF:000002+723-853+Myosin_heavy_chain_10\|G3DSA:1.20.58.530:FF:000001+474-679+Myosin_heavy_chain\|G3DSA:2.30.30.360:FF:000001+34-83+Myosin_heavy_chain\|G3DSA:3.40.850.10:FF:000024+86-298+Myosin_heavy_chain,_isoform_J	PTHR45615+36-1931+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-26;918-1451;1580-1876	3.000	27-917;1452-1579;1877-1975	9gz3_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.705	226983.390	5.327	-34.500	36.557	7.089	57.975	42.025	17.873	18.684	39.747

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	41001.088	94433.338	127785.439	14306.959	6588.187	49942.759	1239.334	153145.947	10501.521	3712.881	6622.298

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.208	-2.860	-3.051	-1.151	2.936	-5.322	1.512	-6.806	1.395	—	—	—	—

No JSON data available for plots.

Back to Browser