Hg_chrom1_TN10mRNA_1499
Organism: Heterodera glycines Gene Locus: chr1:14514927-14520722 Feature type: polypeptideProtein Sequence
Length: 1,303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 0.678 | 0.656 | 0.582 | 1.049 | 1.063 | 0.676 | 1.305 | 0.836 | 1.722 | 0.407 | 0.767 | 1.897 | 1.284 | 1.566 | 1.634 | 0.579 | 1.081 | 0.708 | 0.248 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1435
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRLSPVISKMELEYLRKKH
|
52-72
|
0.997
|
76-98
|
0.998
|
— | — |
0.000
|
— | — |
0.373
|
0.101
|
0.019
|
0.659
|
0.098
|
0.222
|
0.310
|
0.189
|
0.130
|
0.123
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006145
|
1.000
|
1.000
|
Hsc_gene_2432.t1
|
Hsc_gene_2432.t1
|
— |
P59240.2 Nephrocystin-4 [Mus musculus]
|
KAI1719531.1 nephrocystin-4 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005856|GO:0090090|GO:0097730
|
GO:0008150_0.960|GO:0005575_0.933|GO:0110165_0.930|GO:0009987_0.921|GO:0016020_0.869|GO:0005622_0.850|GO:0043226_0.802|GO:0043229_0.781|GO:0005737_0.763|GO:0043227_0.763|GO:0071840_0.762|GO:0016043_0.761|GO:0043228_0.612|GO:0043232_0.612|GO:0030054_0.607|GO:0005856_0.578|GO:0015630_0.558|GO:0005815_0.550|GO:0005814_0.547|GO:0065007_0.547|GO:0050789_0.531|GO:0071944_0.518|GO:0050794_0.512|GO:0005886_0.507
|
IPR029775+52-1290+
|
— | — | — |
PTHR31043+52-1290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
452-524
|
2.000
|
1-451;525-1303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
144475.640
|
8.069
|
23.000
|
22.870
|
11.205
|
44.896
|
55.104
|
12.970
|
9.900
|
50.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
368.991
|
812.387
|
572.272
|
237.101
|
62.632
|
33.275
|
127.820
|
177.684
|
12.405
|
846.344
|
488.941
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.735
|
-1.914
|
-1.162
|
-1.952
|
-0.898
|
1.952
|
2.309
|
-0.332
|
-6.223
|
— |
-3.571
|
— | — |
No JSON data available for plots.