Hg_chrom1_TN10mRNA_15
Organism: Heterodera glycines Gene Locus: chr1:180588-185305 Feature type: polypeptideProtein Sequence
Length: 687
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 0.948 | 0.979 | 0.903 | 0.728 | 0.896 | 0.814 | 1.092 | 1.423 | 1.554 | 0.662 | 1.456 | 1.375 | 0.784 | 1.664 | 0.79 | 0.907 | 0.992 | 0.56 | 0.899 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_15
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.939
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
1-24
|
0.965
|
— | — | — | — |
0.000
|
— | — |
0.149
|
0.525
|
0.127
|
0.217
|
0.856
|
0.210
|
0.333
|
0.440
|
0.299
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005554
|
1.000
|
1.000
|
Hsc_gene_14950.t1
|
Hsc_gene_14950.t1
|
— |
P97849.1 Long-chain fatty acid transport protein 1 [Rattus norvegicus]
|
KAI1732719.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.862|GO:0005575_0.845|GO:0110165_0.814|GO:0009987_0.793|GO:0003674_0.792|GO:0016020_0.715|GO:0071944_0.678|GO:0005886_0.664|GO:0008152_0.663|GO:0044237_0.641|GO:0005622_0.629|GO:0003824_0.624|GO:0005737_0.604|GO:0044238_0.583|GO:0043226_0.561|GO:0044281_0.548|GO:0043229_0.538|GO:0043227_0.525|GO:0043231_0.513|GO:0006082_0.502|GO:0019752_0.502|GO:0043436_0.502
|
IPR000873+123-430+|IPR020845+258-269+|IPR025110+535-614+|IPR042099+102-519+|IPR045851+522-630+
|
— |
PF00501+123-430+AMP-binding_enzyme|PF13193+535-614+AMP-binding_enzyme_C-terminal_domain
|
— |
PTHR43107+62-658+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-687
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
77215.600
|
9.194
|
26.500
|
24.454
|
10.917
|
43.086
|
56.914
|
14.702
|
9.753
|
48.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
854.259
|
1608.508
|
423.248
|
553.533
|
1449.257
|
2871.394
|
685.604
|
944.781
|
157.716
|
417.973
|
306.434
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.157
|
-1.676
|
0.497
|
1.357
|
1.003
|
-2.058
|
-1.717
|
— | — | — | — | — | — |
No JSON data available for plots.