SCN Proteipedia

Hg_chrom1_TN10mRNA_1500

Organism: Heterodera glycines Gene Locus: chr1:14521169-14524007 Feature type: polypeptide

Protein Sequence

Length: 704 (Signal peptide: 1-26)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.305	1.09	0.956	0.147	1.113	1.166	1.099	1.065	0.789	1.593	0.861	1.838	1.499	0.464	0.928	0.71	0.629	0.581	0.983	1.588	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1436	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.981

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	—	—	—	—	—	1-26	0.963	1.000	1.000	1.000	0.149	0.349	0.009	0.157	0.866	0.106	0.283	0.212	0.265	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006146	1.000	1.000	Hsc_gene_2431.t1	Hsc_gene_2431.t1	—	Q9ESM7.1 Protein sel-1 homolog 1 [Mesocricetus auratus]	KAI3422104.1 Protein sel-1 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.905\|GO:0009987_0.762\|GO:0050896_0.712\|GO:0005575_0.687\|GO:0110165_0.687\|GO:0051179_0.667\|GO:0006950_0.660\|GO:0006810_0.654\|GO:0051234_0.654\|GO:0008152_0.650\|GO:0016020_0.644\|GO:0044238_0.628\|GO:0071944_0.606\|GO:0051716_0.598\|GO:0005886_0.595\|GO:0043170_0.592\|GO:0019538_0.583\|GO:0042221_0.579\|GO:0005622_0.574\|GO:0051641_0.574\|GO:0071705_0.572\|GO:0009056_0.568\|GO:0033036_0.558\|GO:0070727_0.556\|GO:0008104_0.555\|GO:0009057_0.554\|GO:0033554_0.554\|GO:0045184_0.553\|GO:1901698_0.551\|GO:0015031_0.550\|GO:0043226_0.550\|GO:0006508_0.547\|GO:0030163_0.545\|GO:0005737_0.542\|GO:0010498_0.538\|GO:0034976_0.538\|GO:0036503_0.538\|GO:0051603_0.538\|GO:0043229_0.530\|GO:0043227_0.514	IPR006597+149-183_150-180_184-220_185-220_221-253_221-256_303-339_305-339_340-376_342-376_377-412_379-412_413-448_449-484_450-482_558-593_559-589_595-627_595-630+\|IPR011990+54-271_287-645+\|IPR050767+124-656+	SM00671+149-183_184-220_221-256_303-339_340-376_377-412_413-448_449-484_558-593_595-630+	PF08238+150-180_185-220_221-253_305-339_342-376_379-412_413-448_450-482_559-589_595-627+Sel1_repeat	—	PTHR11102+124-656+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-704	5b26_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.544	78707.330	6.027	-4.500	24.290	14.205	42.330	57.670	12.358	11.932	45.881

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5096.708	5680.145	5802.701	3033.851	3427.907	3297.487	3886.077	3437.753	12971.945	1856.921	6620.502

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.199	-1.042	-0.827	0.144	—	0.248	—	0.320	2.683	-1.933	—	—	—

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