SCN Proteipedia

Hg_chrom1_TN10mRNA_1501

Organism: Heterodera glycines Gene Locus: chr1:14524279-14526192 Feature type: polypeptide

Protein Sequence

Length: 469

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.917	0.793	0.62	0.441	1.208	0.984	0.863	1.279	0.805	1.181	0.84	1.881	1.54	1.107	2.089	0.731	0.874	1.034	0.656	0.69	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1437	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.878

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KKIIRLLADGVVNRWTRK	49-82	0.988	5-25	0.992	—	—	0.000	—	—	0.061	0.975	0.049	0.108	0.031	0.047	0.050	0.039	0.026	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003069	2.000	1.000	Hsc_gene_2430.t1	Hsc_gene_2430.t1	—	Q93425.3 Small ribosomal subunit protein uS5m [Caenorhabditis elegans]	KAI6213384.1 S5 DRBM domain-containing protein [Aphelenchoides besseyi];KAI6237217.1 S5 DRBM domain-containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412	GO:0005575_0.896\|GO:0110165_0.890\|GO:0005622_0.842\|GO:0005737_0.769\|GO:0016020_0.750\|GO:0043226_0.721\|GO:0043229_0.721\|GO:0003674_0.657\|GO:0043227_0.617\|GO:0043231_0.599\|GO:0008150_0.520	IPR000851+28-326+\|IPR005324+249-318+\|IPR013810+175-235_186-234+\|IPR014721+237-328+\|IPR020568+240-318+\|IPR048584+28-157+	—	PF00333+175-235+Ribosomal_protein_S5,_N-terminal_domain\|PF03719+249-318+Ribosomal_protein_S5,_C-terminal_domain\|PF21251+28-157+Small_ribosomal_subunit_protein_uS5m,_N-terminal	G3DSA:3.30.230.10:FF:000002+236-328+30S_ribosomal_protein_S5	PTHR48277+28-326+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	436-469	1.000	1-435	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.728	53354.520	10.502	30.000	28.998	11.301	46.695	53.305	18.337	10.661	46.269

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	1990.568	2055.610	2077.182	2387.586	2567.394	2030.417	2251.795	1682.116	2391.791	1270.355	1750.971

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.214	0.079	0.309	—	-0.324	0.160	-0.377	0.564	—	—	—	—	—

No JSON data available for plots.

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