SCN Proteipedia

Hg_chrom1_TN10mRNA_1504

Organism: Heterodera glycines Gene Locus: chr1:14530868-14533960 Feature type: polypeptide

Protein Sequence

Length: 521

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.759	0.982	1.047	0.993	1.376	1.181	0.777	1.248	1.194	1.401	0.814	0.903	1.333	0.664	1.214	1.234	0.409	1.047	0.295	1.016	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1440	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|lysosome_vacuole	—	RKWPFRLSEQQLDSRRRML	—	—	20-50	0.983	—	—	0.000	—	—	0.333	0.223	0.023	0.596	0.235	0.712	0.282	0.002	0.507	0.091

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006149	1.000	1.000	Hsc_gene_2427.t1	Hsc_gene_2427.t1	—	Q3UHD6.2 Sorting nexin-27 [Mus musculus]	KAI1720625.1 PX domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006886\|GO:0007165\|GO:0032266\|GO:0035091	GO:0008150_0.867\|GO:0005575_0.861\|GO:0110165_0.859\|GO:0009987_0.779\|GO:0016020_0.750\|GO:0005622_0.745\|GO:0043226_0.668\|GO:0071944_0.647\|GO:0043229_0.645\|GO:0003674_0.642\|GO:0005886_0.637\|GO:0065007_0.637\|GO:0043227_0.618\|GO:0005737_0.609\|GO:0005488_0.574\|GO:0005515_0.540\|GO:0051179_0.537\|GO:0051234_0.529\|GO:0006810_0.528\|GO:0050789_0.514\|GO:0043231_0.504	IPR000159+277-350+\|IPR001478+28-120_30-123_31-119_38-123+\|IPR001683+151-256_152-260_176-255+\|IPR036034+23-123_24-122+\|IPR036871+152-256_153-255+\|IPR037831+156-503+\|IPR037833+151-256+	SM00228+38-123+\|SM00312+151-256+	PF00595+31-119+PDZ_domain\|PF00787+176-255+PX_domain\|PF00788+277-350+Ras_association_(RalGDS/AF-6)_domain	G3DSA:2.30.42.10:FF:000061+23-122+sorting_nexin-27_isoform_X2\|G3DSA:3.30.1520.10:FF:000003+153-256+sorting_nexin-27_isoform_X2	PTHR12431+156-503+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-17	1.000	18-521	7pcb_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.529	58592.490	5.524	-7.500	27.831	11.132	47.793	52.207	13.820	14.012	47.409

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	1525.710	4189.001	1357.852	1114.442	1083.788	1233.146	1469.485	1453.143	1128.313	1365.924	1264.091

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.855	-2.047	-0.176	—	0.201	0.263	—	—	—	—	—	—	—

No JSON data available for plots.

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