Hg_chrom1_TN10mRNA_1507
Organism: Heterodera glycines Gene Locus: chr1:14539275-14540835 Feature type: polypeptideProtein Sequence
Length: 427
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.98 | 0.762 | 0.979 | 1.211 | 0.82 | 1.081 | 0.585 | 1.874 | 0.885 | 1.392 | 0.71 | 0.964 | 1.561 | 1.036 | 1.721 | 1.405 | 0.614 | 0.887 | 0.18 | 0.551 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1443
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cell_membrane
|
chloroplast
|
RKRRRKRHKKEKK
|
— | — |
58-80
|
0.999
|
— |
0.612
|
0.131
|
1.000
|
— |
0.093
|
0.079
|
0.008
|
0.193
|
0.178
|
0.195
|
0.436
|
0.093
|
0.746
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006151
|
1.000
|
1.000
|
Hsc_gene_2425.t1
|
Hsc_gene_2425.t1
|
— | — |
KAI6189956.1 ZP domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.934|GO:0110165_0.934|GO:0071944_0.754|GO:0030312_0.550|GO:0031012_0.545|GO:0060102_0.540|GO:0060111_0.540|GO:0062023_0.540
|
IPR001507+45-310+|IPR042235+205-340+|IPR051962+45-405+
|
SM00241+45-310+
|
— | — |
PTHR22907+45-405+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-427
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
47796.680
|
8.860
|
20.000
|
27.166
|
11.475
|
48.244
|
51.756
|
16.862
|
10.304
|
50.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
45.177
|
63.329
|
17.874
|
48.456
|
59.867
|
37.154
|
104.798
|
22.725
|
9.605
|
57.621
|
37.043
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.054
|
-0.523
|
1.548
|
— |
-0.673
|
1.508
|
-0.819
|
2.350
|
— | — | — | — | — |