SCN Proteipedia

Hg_chrom1_TN10mRNA_1508

Organism: Heterodera glycines Gene Locus: chr1:14543580-14547178 Feature type: polypeptide

Protein Sequence

Length: 556

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.15	1.548	1.177	0.372	1.499	1.937	0.621	1.079	0.759	1.58	1.09	1.27	0.35	0.657	1.064	0.797	0.649	0.681	0.277	0.952	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1444	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-ppJ2_pJ2	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.438	0.243	0.010	0.627	0.126	0.345	0.378	0.067	0.384	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003070	2.000	1.000	Hsc_gene_2424.t1	Hsc_gene_2424.t1	—	P46822.2 Kinesin light chain [Caenorhabditis elegans]	KAI3422094.1 Kinesin light chain 2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005871	GO:0005575_0.869\|GO:0110165_0.863\|GO:0008150_0.836\|GO:0016020_0.772\|GO:0005622_0.767\|GO:0009987_0.726\|GO:0043226_0.720\|GO:0043229_0.690\|GO:0003674_0.683\|GO:0043227_0.638\|GO:0032991_0.600\|GO:0071944_0.598\|GO:0051179_0.596\|GO:0005886_0.583\|GO:0005737_0.582\|GO:0005488_0.578\|GO:0005515_0.556\|GO:0043228_0.548\|GO:0043232_0.548\|GO:0051234_0.503	IPR002151+2-514+\|IPR011990+181-490_208-325_287-476+\|IPR019734+210-243_252-285_294-327_336-369_378-411_457-490_459-491+	SM00028+210-243_252-285_294-327_336-369_378-411_457-490+	PF13176+459-491+Tetratricopeptide_repeat\|PF13374+377-408+Tetratricopeptide_repeat\|PF13424+210-283_293-368+Tetratricopeptide_repeat	G3DSA:1.25.40.10:FF:000003+189-490+kinesin_light_chain_isoform_X1	PTHR45783+2-514+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	104-205;472-556	2.000	1-103;206-471	3nf1_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.568	62371.880	5.188	-11.000	30.036	7.014	53.777	46.223	14.568	15.468	46.763

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	darkolivegreen	3098.218	2224.086	3766.454	2736.027	2765.336	2350.234	2223.290	2177.948	3296.749	4240.875	3836.249

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.531	0.162	-0.353	—	-0.220	—	—	—	—	—	—	—	—

No JSON data available for plots.

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