Hg_chrom1_TN10mRNA_151
Organism: Heterodera glycines Gene Locus: chr1:1096725-1097806 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 0.92 | 1.13 | 0.584 | 1.13 | 1.883 | 0.471 | 1.412 | 1.004 | 1.374 | 1.455 | 0.997 | 1.569 | 0.978 | 1.73 | 1.049 | 0.741 | 0.599 | 0.0 | 0.166 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_146
|
— | — |
0.333
|
— |
1.000
|
1.000
|
— | — |
1.000
|
— | — | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.469
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.416
|
0.370
|
0.069
|
0.483
|
0.144
|
0.049
|
0.093
|
0.401
|
0.172
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000054
|
2.000
|
20.000
|
Hsc_gene_14559.t1;Hsc_gene_14559.t2;Hsc_gene_14559.t3;Hsc_gene_14559.t4;Hsc_gene_17258.t1;Hsc_gene_17259.t1;Hsc_gene_23670.t1;Hsc_gene_23670.t2;Hsc_gene_23670.t3;Hsc_gene_23670.t4;Hsc_gene_23670.t5;Hsc_gene_23954.t1;Hsc_gene_23954.t2;Hsc_gene_24050.t1;Hsc_gene_3583.t1;Hsc_gene_3583.t2;Hsc_gene_3583.t3;Hsc_gene_3583.t4;Hsc_gene_3583.t5;Hsc_gene_3583.t6
|
Hsc_gene_14559.t2;Hsc_gene_17258.t1;Hsc_gene_17259.t1;Hsc_gene_23670.t1;Hsc_gene_23670.t3
|
— | — | — |
MCK5475302
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52
|
1.000
|
53-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
20404.350
|
10.332
|
11.500
|
33.898
|
9.040
|
57.062
|
42.938
|
20.904
|
12.994
|
42.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
3.894
|
2.601
|
1.502
|
9.178
|
12.869
|
3.977
|
10.351
|
4.950
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.682
|
2.735
|
— |
-1.678
|
1.391
|
— |
1.209
|
— | — | — | — | — |
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