Hg_chrom1_TN10mRNA_1511
Organism: Heterodera glycines Gene Locus: chr1:14553005-14554065 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 1.638 | 1.024 | 0.729 | 1.408 | 0.722 | 0.252 | 1.408 | 1.408 | 1.332 | 0.96 | 2.071 | 2.152 | 0.0 | 1.15 | 0.402 | 0.577 | 1.601 | 0.542 | 1.864 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.462
|
0.074
|
0.016
|
0.550
|
0.200
|
0.559
|
0.684
|
0.238
|
0.059
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006154
|
1.000
|
1.000
|
Hsc_gene_2421.t1
|
Hsc_gene_2421.t1
|
F02E8.3
|
P53680.2 AP-2 complex subunit sigma [Homo sapiens]
|
XP_018020051.1 AP-2 complex subunit sigma [Hyalella azteca]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0015031|GO:0016192|GO:0030117|GO:0030122|GO:0035615|GO:0072583
|
GO:0005575_0.865|GO:0110165_0.864|GO:0005622_0.821|GO:0005737_0.765|GO:0016020_0.745|GO:0008150_0.704|GO:0043226_0.685|GO:0043229_0.669|GO:0043227_0.662|GO:0043231_0.653|GO:0009987_0.638|GO:0071944_0.587|GO:0005886_0.555
|
IPR000804+57-67+|IPR011012+1-139+|IPR016635+1-142_2-138+|IPR022775+1-141+|IPR027156+1-141+
|
— |
PF01217+1-141+Clathrin_adaptor_complex_small_chain
|
G3DSA:3.30.450.60:FF:000004+1-142+AP_complex_subunit_sigma
|
PTHR11753+2-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-142
|
8t1o_S
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
17015.700
|
6.092
|
-1.000
|
28.873
|
17.606
|
45.070
|
54.930
|
14.789
|
14.085
|
39.437
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
527.659
|
331.618
|
380.017
|
498.486
|
619.174
|
505.229
|
547.981
|
354.179
|
531.033
|
696.478
|
625.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.451
|
0.499
|
0.281
|
-0.279
|
— |
-0.615
|
0.770
|
— | — | — | — | — |
No JSON data available for plots.