Hg_chrom1_TN10mRNA_1512
Organism: Heterodera glycines Gene Locus: chr1:14554360-14557161 Feature type: polypeptideProtein Sequence
Length: 624
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 1.528 | 0.874 | 0.276 | 2.404 | 1.972 | 0.343 | 0.881 | 0.748 | 1.104 | 2.088 | 2.262 | 0.534 | 0.308 | 0.752 | 0.87 | 0.972 | 0.607 | 0.0 | 0.33 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1448
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KKTEEEGNSKQKRKSDK,SKQKRKSDKHKQKMKSKSPK
|
— | — | — | — | — | — |
0.007
|
— | — |
0.243
|
0.299
|
0.034
|
0.173
|
0.783
|
0.133
|
0.141
|
0.012
|
0.244
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006155
|
1.000
|
1.000
|
Hsc_gene_2420.t1
|
Hsc_gene_2420.t1
|
— | — |
AAC46496.1 SEC-1 [Meloidogyne incognita];prf||2103308A esophageal gland protein [Meloidogyne incognita]
|
No
|
-0.470
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-624
|
1.000
|
1-36
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
71630.560
|
5.833
|
-5.500
|
38.462
|
4.808
|
64.744
|
35.256
|
19.231
|
19.231
|
40.224
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgreen
|
8073.469
|
2672.110
|
3604.604
|
3808.002
|
4277.764
|
4657.632
|
4103.741
|
2641.475
|
32350.619
|
1396.463
|
14662.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.203
|
0.374
|
0.187
|
0.136
|
— |
-0.172
|
-0.923
|
0.779
|
4.417
|
-2.937
|
— | — | — |
No JSON data available for plots.