Hg_chrom1_TN10mRNA_1513
Organism: Heterodera glycines Gene Locus: chr1:14558047-14565957 Feature type: polypeptideProtein Sequence
Length: 1,440
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 0.743 | 0.922 | 1.125 | 1.019 | 0.873 | 1.157 | 1.424 | 0.864 | 1.351 | 0.442 | 0.654 | 1.273 | 1.322 | 1.361 | 1.488 | 0.592 | 0.684 | 0.801 | 0.511 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1449
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
— | — | — |
23-45
|
0.965
|
1-20
|
0.998
|
1.000
|
0.000
|
0.000
|
0.131
|
0.053
|
0.013
|
0.342
|
0.289
|
0.500
|
0.449
|
0.090
|
0.764
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006156
|
1.000
|
1.000
|
Hsc_gene_2419.t1
|
Hsc_gene_2419.t1
|
— |
F1QVU0.1 Tyrosine-protein kinase receptor [Danio rerio]
|
KAI1720639.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0004714|GO:0005515|GO:0005524|GO:0006468|GO:0007169|GO:0016020
|
GO:0008150_0.924|GO:0009987_0.830|GO:0005575_0.825|GO:0110165_0.800|GO:0065007_0.778|GO:0050789_0.766|GO:0050896_0.762|GO:0051716_0.734|GO:0050794_0.716|GO:0032502_0.714|GO:0048856_0.714|GO:0032501_0.708|GO:0003674_0.686|GO:0007154_0.668|GO:0023052_0.667|GO:0016020_0.630|GO:0007165_0.626|GO:0071944_0.612|GO:0007275_0.596|GO:0005886_0.589|GO:0003824_0.578|GO:0140096_0.578|GO:0016740_0.549|GO:0008152_0.542|GO:0048731_0.526|GO:0044238_0.521|GO:0005488_0.517|GO:0005515_0.517|GO:0005622_0.510
|
IPR000719+941-1210+|IPR000998+310-506+|IPR001245+942-1204_1019-1032_1062-1080_1114-1124_1133-1155_1177-1199+|IPR002011+1099-1107+|IPR002172+258-304_259-297+|IPR008266+1068-1080+|IPR011009+938-1239+|IPR013320+309-504+|IPR017441+947-973+|IPR020635+941-1206+|IPR050122+794-1209+
|
SM00219+941-1206+
|
PF07714+942-1204+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:1.10.510.10:FF:000113+1022-1210+Tyrosine-protein_kinase_receptor
|
PTHR24416+794-1209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1225-1440
|
1.000
|
1-1224
|
5aaa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
155078.540
|
6.403
|
-2.500
|
23.611
|
10.208
|
44.236
|
55.764
|
12.431
|
11.181
|
55.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1178.989
|
4209.590
|
1798.524
|
1367.667
|
831.727
|
624.792
|
670.416
|
1484.210
|
15.329
|
1026.482
|
593.131
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.457
|
-1.759
|
-0.286
|
-0.750
|
-0.398
|
— |
1.146
|
-1.005
|
-6.187
|
6.693
|
— | — | — |