Hg_chrom1_TN10mRNA_1516
Organism: Heterodera glycines Gene Locus: chr1:14572449-14575613 Feature type: polypeptideProtein Sequence
Length: 653
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 0.926 | 1.086 | 0.686 | 1.225 | 1.767 | 0.638 | 1.072 | 1.055 | 1.511 | 0.626 | 1.261 | 1.106 | 1.119 | 1.531 | 1.072 | 0.603 | 0.766 | 0.942 | 0.225 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1452
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
24-48
|
0.937
|
— | — |
0.000
|
— | — |
0.234
|
0.215
|
0.056
|
0.627
|
0.117
|
0.561
|
0.431
|
0.081
|
0.276
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006159
|
1.000
|
1.000
|
Hsc_gene_2416.t1
|
Hsc_gene_2416.t1;Hsc_gene_2416.t2
|
— |
Q96C34.3 RUN domain-containing protein 1 [Homo sapiens]
|
KAI1719496.1 RUN domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.957|GO:0005575_0.618|GO:0110165_0.618|GO:0032501_0.503
|
IPR004012+443-641_451-639_577-639+|IPR037213+396-648_451-640+|IPR047343+383-643+
|
SM00593+577-639+
|
PF02759+451-639+RUN_domain
|
— |
PTHR15591+383-643+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51;158-201
|
2.000
|
52-157;202-653
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
73181.110
|
6.058
|
-4.000
|
27.106
|
8.116
|
49.158
|
50.842
|
13.783
|
13.323
|
47.933
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
466.307
|
1119.891
|
985.419
|
451.664
|
147.986
|
64.555
|
100.618
|
429.843
|
712.966
|
267.877
|
458.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.415
|
-1.447
|
-1.016
|
-1.643
|
-1.182
|
0.651
|
2.637
|
-1.954
|
— | — | — | — | — |
No JSON data available for plots.