Hg_chrom1_TN10mRNA_1517
Organism: Heterodera glycines Gene Locus: chr1:14575918-14579838 Feature type: polypeptideProtein Sequence
Length: 752
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 0.959 | 0.919 | 0.688 | 1.441 | 0.546 | 1.108 | 0.798 | 1.625 | 0.916 | 0.987 | 1.799 | 0.997 | 1.074 | 1.14 | 0.912 | 0.654 | 1.108 | 0.818 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1453
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.657
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.203
|
0.313
|
0.019
|
0.764
|
0.152
|
0.271
|
0.128
|
0.182
|
0.207
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006160
|
1.000
|
1.000
|
Hsc_gene_2415.t1
|
Hsc_gene_2415.t1
|
— |
P32232.3 Cystathionine beta-synthase [Rattus norvegicus]
|
KAI1719494.1 pyridoxal-phosphate dependent enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006535
|
GO:0008150_0.871|GO:0003674_0.787|GO:0009987_0.751|GO:0008152_0.721|GO:0044238_0.699|GO:0005575_0.687|GO:0009058_0.678|GO:0044237_0.674|GO:0110165_0.662|GO:0003824_0.644|GO:0044249_0.630|GO:0044281_0.621|GO:0006520_0.595|GO:0006082_0.591|GO:0019752_0.591|GO:0043436_0.591|GO:1901605_0.571|GO:0170033_0.569|GO:0170039_0.569|GO:0005622_0.568|GO:0006790_0.565|GO:0000096_0.558|GO:0006534_0.558|GO:0009069_0.558|GO:0044272_0.558|GO:0008652_0.542|GO:0044283_0.530|GO:0016053_0.526|GO:0046394_0.525|GO:1901607_0.521|GO:0170034_0.519|GO:0170038_0.518|GO:0000097_0.513|GO:0009070_0.513|GO:0019344_0.513|GO:0005737_0.505
|
IPR001216+82-100+|IPR001926+55-347_425-718+|IPR036052+46-365_58-353_90-203_420-737_428-724_461-574+|IPR050214+50-362+
|
— |
PF00291+55-347_425-718+Pyridoxal-phosphate_dependent_enzyme
|
G3DSA:3.40.50.1100:FF:000003+90-203_461-574+Cystathionine_beta-synthase|G3DSA:3.40.50.1100:FF:000118+210-362_584-733+Related_to_CYS4-cystathionine_beta-synthase
|
PTHR10314+50-362+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;743-752
|
1.000
|
27-742
|
1m54_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
82606.570
|
5.763
|
-6.000
|
27.394
|
8.644
|
44.016
|
55.984
|
13.697
|
13.697
|
51.330
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
1540.439
|
1422.191
|
937.530
|
2360.633
|
2818.150
|
2918.581
|
3431.009
|
1454.290
|
135.181
|
884.643
|
563.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.829
|
0.594
|
1.440
|
0.223
|
— |
0.244
|
-1.109
|
1.381
|
-2.842
|
4.313
|
— | — | — |
No JSON data available for plots.