Hg_chrom1_TN10mRNA_1518
Organism: Heterodera glycines Gene Locus: chr1:14584522-14587463 Feature type: polypeptideProtein Sequence
Length: 508
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 0.824 | 0.859 | 0.815 | 0.951 | 0.606 | 0.562 | 0.886 | 1.094 | 1.756 | 0.597 | 1.737 | 1.695 | 1.06 | 1.085 | 1.153 | 1.033 | 0.984 | 1.969 | 1.158 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1454
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-25
|
0.787
|
0.535
|
4.000
|
4.000
|
0.065
|
0.067
|
0.013
|
0.159
|
0.241
|
0.148
|
0.201
|
0.008
|
0.845
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006161
|
1.000
|
1.000
|
Hsc_gene_2414.t1
|
Hsc_gene_2414.t1
|
— |
A8WQK3.2 Acetylcholine receptor subunit alpha-type acr-16 [Caenorhabditis briggsae]
|
KAI3422084.1 Acetylcholine receptor subunit alpha-type acr-16 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.938|GO:0110165_0.938|GO:0008150_0.885|GO:0071944_0.864|GO:0016020_0.845|GO:0005886_0.839|GO:0009987_0.818|GO:0065007_0.755|GO:0050789_0.731|GO:0006810_0.700|GO:0051179_0.700|GO:0051234_0.700|GO:0050896_0.699|GO:0007154_0.689|GO:0023052_0.686|GO:0003674_0.655|GO:0051716_0.630|GO:0055085_0.625|GO:0030054_0.619|GO:0007267_0.615|GO:0045202_0.613|GO:0098916_0.613|GO:0099536_0.613|GO:0099537_0.613|GO:0007268_0.606|GO:0032501_0.606|GO:0050794_0.602|GO:0006811_0.595|GO:0034220_0.591|GO:0007165_0.558|GO:0060089_0.557|GO:0038023_0.556|GO:0003008_0.547|GO:0098590_0.544|GO:0005215_0.528|GO:0022857_0.528|GO:0006812_0.526|GO:0098655_0.519|GO:0050877_0.516|GO:0065008_0.514|GO:0007166_0.506|GO:0015267_0.501|GO:0022803_0.501
|
IPR002394+63-79_97-111_115-127_133-151+|IPR006029+243-494+|IPR006201+27-501_34-389_76-92_109-120_153-167_230-242+|IPR006202+29-236+|IPR018000+153-167+|IPR036719+236-507+|IPR036734+22-241_28-235+|IPR038050+242-355_443-508+
|
— |
PF02931+29-236+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+243-494+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000046+242-357+AcetylCholine_Receptor|G3DSA:2.70.170.10:FF:000016+22-241+Nicotinic_acetylcholine_receptor_subunit
|
PTHR18945+34-389+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-508
|
8ci2_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
58107.310
|
6.241
|
-1.500
|
21.457
|
14.370
|
41.732
|
58.268
|
11.024
|
10.433
|
47.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
410.490
|
240.389
|
1010.229
|
238.213
|
143.879
|
224.517
|
265.328
|
1532.971
|
35.053
|
398.780
|
242.897
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.842
|
— |
-1.976
|
-0.760
|
0.656
|
— |
2.671
|
-2.388
|
— | — | — | — | — |