Hg_chrom1_TN10mRNA_1519
Organism: Heterodera glycines Gene Locus: chr1:14587490-14591639 Feature type: polypeptideProtein Sequence
Length: 606
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 1.19 | 0.51 | 0.341 | 1.238 | 1.608 | 0.747 | 1.403 | 0.623 | 1.003 | 0.475 | 0.971 | 1.192 | 2.031 | 1.347 | 1.509 | 0.974 | 0.8 | 0.254 | 0.388 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1455
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.498
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKQNERRENEIRKMREK,RRPREAEDHQLTDEDKDRR,RRERNKQAAARCRRRREEK,KDRRAKRRERNKQAAARCRRRREE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.889
|
0.133
|
0.011
|
0.327
|
0.031
|
0.024
|
0.029
|
0.008
|
0.055
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001726
|
1.000
|
3.000
|
Hsc_gene_2413.t1;Hsc_gene_2413.t2;Hsc_gene_2413.t3
|
Hsc_gene_2413.t2
|
— | — |
KAI3422083.1 hypothetical protein GPALN_012618 [Globodera pallida]
|
KAI9614787
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003700|GO:0006355|GO:0006357
|
— |
IPR000837+111-321+|IPR004827+287-317_292-307+|IPR046347+290-326+
|
— | — | — |
PTHR23351+111-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-100;182-606
|
1.000
|
101-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
66049.670
|
7.092
|
5.500
|
22.772
|
8.746
|
50.660
|
49.340
|
12.541
|
10.231
|
55.941
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1760.307
|
2667.636
|
1499.449
|
991.934
|
1144.934
|
2388.650
|
1922.420
|
1518.496
|
446.752
|
2816.210
|
1800.728
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.060
|
-1.564
|
-0.487
|
0.176
|
1.075
|
-0.302
|
-0.760
|
0.484
|
— | — | — | — | — |
No JSON data available for plots.