Hg_chrom1_TN10mRNA_1520
Organism: Heterodera glycines Gene Locus: chr1:14592737-14595467 Feature type: polypeptideProtein Sequence
Length: 541
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 0.903 | 0.975 | 0.829 | 1.14 | 1.564 | 0.792 | 1.386 | 0.904 | 1.274 | 0.756 | 0.87 | 1.438 | 0.782 | 1.547 | 1.03 | 0.818 | 1.008 | 1.28 | 0.435 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1456
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RRKMKYIVNGTVGRRRKKD,RKMKYIVNGTVGRRRKKDK,GRRRKKDKSAEKEKEKRRETKA
|
28-48
|
0.975
|
56-76
|
0.976
|
1-21
|
0.949
|
1.000
|
1.000
|
1.000
|
0.127
|
0.013
|
0.007
|
0.272
|
0.244
|
0.373
|
0.533
|
0.177
|
0.815
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006162
|
1.000
|
1.000
|
Hsc_gene_2412.t1
|
Hsc_gene_2412.t1
|
— |
Q19053.2 Cuticlin-4 [Caenorhabditis elegans]
|
KAI1719556.1 zona pellucida-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.925|GO:0071944_0.829|GO:0030312_0.557|GO:0031012_0.547|GO:0062023_0.545|GO:0060102_0.540
|
IPR001507+39-279_39-282+|IPR051962+11-490+
|
SM00241+39-282+
|
— | — |
PTHR22907+11-490+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
275-403;511-541
|
2.000
|
1-274;404-510
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
61089.280
|
7.773
|
9.500
|
27.542
|
11.091
|
49.723
|
50.277
|
15.342
|
12.200
|
48.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
454.324
|
32.208
|
76.102
|
71.310
|
23.918
|
66.402
|
89.799
|
66.107
|
67.077
|
1777.669
|
1044.558
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.011
|
1.009
|
— |
-1.609
|
1.487
|
0.445
|
— |
0.585
|
-4.850
|
— |
-5.737
|
— | — |