Hg_chrom1_TN10mRNA_1522
Organism: Heterodera glycines Gene Locus: chr1:14603656-14606867 Feature type: polypeptideProtein Sequence
Length: 449
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.243 | 0.243 | 0.691 | 0.817 | 0.685 | 0.716 | 1.225 | 1.435 | 1.505 | 0.776 | 2.227 | 1.609 | 0.771 | 1.454 | 1.177 | 1.095 | 0.911 | 1.199 | 0.459 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1458
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
30-70
|
0.868
|
— | — | — | — |
0.000
|
— | — |
0.068
|
0.048
|
0.019
|
0.101
|
0.354
|
0.144
|
0.109
|
0.059
|
0.863
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006164
|
1.000
|
1.000
|
Hsc_gene_2410.t1
|
Hsc_gene_2410.t1
|
— |
P34488.4 Putative G-protein coupled receptor F59B2.13 [Caenorhabditis elegans]
|
KAI1720598.1 serpentine type 7TM GPCR chemoreceptor srw domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+30-54_50-327_62-83_112-134_215-238_281-305_323-349+|IPR017452+45-341+
|
— |
PF00001+50-327+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR46895+5-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
364-449
|
1.000
|
1-363
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
50358.020
|
10.746
|
32.500
|
20.935
|
11.359
|
43.875
|
56.125
|
14.699
|
6.236
|
47.439
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
792.786
|
3510.487
|
1478.139
|
470.882
|
133.999
|
832.826
|
1326.894
|
1138.250
|
117.076
|
46.327
|
76.648
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.478
|
-3.035
|
-1.541
|
-1.843
|
2.648
|
0.683
|
— |
0.361
|
— | — | — | — | — |
No JSON data available for plots.