Hg_chrom1_TN10mRNA_1523
Organism: Heterodera glycines Gene Locus: chr1:14606764-14608451 Feature type: polypeptideProtein Sequence
Length: 421
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.077 | 0.718 | 0.777 | 0.41 | 2.375 | 0.974 | 1.159 | 0.594 | 0.845 | 0.867 | 1.727 | 1.118 | 0.99 | 0.731 | 1.26 | 0.848 | 0.896 | 0.36 | 1.279 | 0.21 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1459
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.596
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRQKSTTGWMRGEKSKRKG,RGEKSKRKGTKRTEEAESGGRGGGKAGKEKAKSGGREGGKAGEEEAEKRGKEKAEKRGEEEAEKRGKEKAEKRGKEKAEKRGEEEAEKRGKEEAEKRKKDKG
|
4-39
|
0.813
|
— | — | — | — |
0.163
|
— | — |
0.338
|
0.131
|
0.008
|
0.651
|
0.180
|
0.134
|
0.196
|
0.003
|
0.283
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006165
|
1.000
|
1.000
|
Hsc_gene_2409.t1
|
Hsc_gene_2409.t1
|
— | — |
KAI3422080.1 hypothetical protein GPALN_012615 [Globodera pallida]
|
MBR4973272
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
155-421
|
1.000
|
1-154
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
46859.440
|
6.156
|
-1.500
|
37.292
|
7.126
|
55.582
|
44.418
|
18.765
|
18.527
|
45.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
tan
|
336.572
|
205.311
|
348.311
|
241.113
|
149.312
|
204.952
|
133.682
|
781.027
|
670.525
|
195.719
|
399.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
— |
-0.421
|
-0.723
|
0.471
|
-0.607
|
1.835
|
-2.409
|
— | — | — | — | — |
No JSON data available for plots.