Hg_chrom1_TN10mRNA_1524
Organism: Heterodera glycines Gene Locus: chr1:14608853-14612109 Feature type: polypeptideProtein Sequence
Length: 739
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.101 | 1.353 | 0.467 | 1.917 | 0.694 | 0.773 | 0.744 | 0.842 | 1.061 | 1.435 | 0.876 | 1.729 | 0.729 | 0.911 | 1.025 | 0.821 | 0.861 | 0.729 | 0.557 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1460
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,KRKVTFSSESKVVRK,GEKGKEKEEKGGKEAEKDKQKAEEGTELSKKAKKIRAKRKGEAGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.892
|
0.072
|
0.010
|
0.337
|
0.053
|
0.010
|
0.065
|
0.004
|
0.071
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006166
|
1.000
|
1.000
|
Hsc_gene_2408.t1
|
— | — |
A8QFQ3.1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [Brugia malayi]
|
KAH7730243.1 CBN-JMJC-1 protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.796|GO:0110165_0.792|GO:0005622_0.751|GO:0008150_0.717|GO:0016020_0.716|GO:0043226_0.715|GO:0043229_0.685|GO:0043227_0.641|GO:0043231_0.612|GO:0003674_0.568|GO:0005634_0.507
|
IPR003347+367-489_370-507+|IPR039994+559-685+|IPR049043+565-682+
|
— |
PF08007+367-489+JmjC_domain|PF21233+565-682+Ribosomal_oxygenase_1,_C-terminal_winged_helix_domain
|
— |
PTHR13096+559-685+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-222;689-739
|
1.000
|
223-688
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
83467.320
|
4.668
|
-31.500
|
34.371
|
10.555
|
53.992
|
46.008
|
15.426
|
18.945
|
48.173
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2153.241
|
1425.898
|
1882.369
|
3251.686
|
3695.249
|
2773.173
|
3619.022
|
1271.101
|
1802.109
|
1349.410
|
1543.424
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.171
|
1.052
|
0.898
|
0.153
|
-0.400
|
0.395
|
-1.231
|
1.652
|
— | — | — | — | — |
No JSON data available for plots.