Hg_chrom1_TN10mRNA_1525
Organism: Heterodera glycines Gene Locus: chr1:14612524-14616509 Feature type: polypeptideProtein Sequence
Length: 721
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.629 | 1.451 | 1.084 | 0.717 | 1.11 | 0.96 | 0.594 | 1.248 | 1.017 | 1.331 | 1.072 | 1.876 | 1.348 | 0.613 | 1.387 | 1.308 | 0.841 | 0.651 | 1.067 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1461
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRTKSQMIAEEAKRIRT,KRKGNGTAYFIGKMRKLER
|
— | — |
71-92
|
0.995
|
— | — |
0.000
|
— | — |
0.334
|
0.155
|
0.013
|
0.718
|
0.081
|
0.282
|
0.191
|
0.048
|
0.172
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006167
|
1.000
|
1.000
|
Hsc_gene_2407.t1
|
Hsc_gene_2407.t1
|
— |
E9P886.1 Tubulin polyglutamylase ttll-5 [Caenorhabditis elegans]
|
KAI1719569.1 tubulin-tyrosine ligase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036211
|
GO:0008150_0.801|GO:0005575_0.789|GO:0110165_0.789|GO:0003674_0.714|GO:0005622_0.699|GO:0016020_0.574|GO:0043226_0.566|GO:0003824_0.562|GO:0140096_0.532|GO:0043229_0.520
|
IPR004344+56-416_108-407+
|
— |
PF03133+108-407+Tubulin-tyrosine_ligase_family
|
— |
PTHR12241+43-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
617-721
|
1.000
|
1-616
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
82811.060
|
8.500
|
18.000
|
28.988
|
11.650
|
53.259
|
46.741
|
16.366
|
12.621
|
46.463
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
1160.496
|
1507.899
|
1107.722
|
1253.138
|
1260.141
|
984.128
|
1543.233
|
896.669
|
887.360
|
1204.301
|
1068.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.674
|
-0.404
|
0.286
|
— |
-0.342
|
0.660
|
— |
0.925
|
— | — | — | — | — |
No JSON data available for plots.